Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2013

Experiment: Rifampicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.001 mg/ml
2,399,266	-				+2.4
2,399,343	+				+0.4
2,399,351	-				+0.5
2,399,351	-				-1.0
2,399,361	+				-0.5
2,399,427	-		Shewana3_2012	0.26	+0.4
2,399,624	+		Shewana3_2012	0.76	-0.5
2,399,699	+				-1.0
2,399,715	+				+1.4
2,399,880	-		Shewana3_2013	0.13	-0.3
2,399,986	+		Shewana3_2013	0.22	+0.7
2,399,996	-		Shewana3_2013	0.23	+0.4
2,400,098	-		Shewana3_2013	0.31	+0.4
2,400,108	-		Shewana3_2013	0.32	+1.4
2,400,108	-		Shewana3_2013	0.32	+0.1
2,400,191	-		Shewana3_2013	0.38	+0.8
2,400,259	+		Shewana3_2013	0.44	-1.3
2,400,261	-		Shewana3_2013	0.44	+2.4
2,400,267	-		Shewana3_2013	0.44	-0.4
2,400,269	+		Shewana3_2013	0.45	-1.3
2,400,279	+		Shewana3_2013	0.45	+1.4
2,400,480	+		Shewana3_2013	0.62	+0.8
2,400,579	+		Shewana3_2013	0.70	+1.4
2,400,588	-		Shewana3_2013	0.70	+1.4
2,400,810	+		Shewana3_2013	0.88	-0.9
2,400,818	-		Shewana3_2013	0.89	-2.3
2,400,857	-				+0.7
2,400,904	+				+0.8
2,401,176	+				+0.4
2,401,613	+		Shewana3_2014	0.39	+0.1
2,401,767	-		Shewana3_2014	0.56	-0.6
2,401,798	-		Shewana3_2014	0.59	-0.6