Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1875

Experiment: Rifampicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.001 mg/ml
2,219,120	-				+1.1
2,219,335	+		Shewana3_1874	0.12	+0.6
2,219,666	-		Shewana3_1874	0.49	+0.5
2,219,708	-		Shewana3_1874	0.54	+1.5
2,219,768	+		Shewana3_1874	0.61	-1.2
2,219,774	-		Shewana3_1874	0.62	+0.2
2,219,816	-		Shewana3_1874	0.67	-0.5
2,219,880	+		Shewana3_1874	0.74	+1.5
2,219,939	+		Shewana3_1874	0.81	-1.2
2,219,939	+		Shewana3_1874	0.81	+0.2
2,220,008	-		Shewana3_1874	0.88	+0.2
2,220,066	-				+2.5
2,220,223	-				-0.9
2,220,273	+				-0.1
2,220,295	+				+0.2
2,220,295	+				+0.9
2,220,356	+				+0.6
2,220,364	-		Shewana3_1875	0.10	-0.1
2,220,440	+		Shewana3_1875	0.13	+1.5
2,220,468	-		Shewana3_1875	0.14	-0.1
2,220,595	+		Shewana3_1875	0.19	+1.9
2,220,596	+		Shewana3_1875	0.19	-0.3
2,220,697	+		Shewana3_1875	0.23	-1.4
2,220,697	+		Shewana3_1875	0.23	+1.5
2,220,698	+		Shewana3_1875	0.23	+1.1
2,220,705	-		Shewana3_1875	0.24	+0.7
2,220,706	-		Shewana3_1875	0.24	+0.9
2,221,029	-		Shewana3_1875	0.37	+1.5
2,221,068	-		Shewana3_1875	0.38	+0.9
2,221,136	+		Shewana3_1875	0.41	-0.4
2,221,144	-		Shewana3_1875	0.41	+0.9
2,221,348	+		Shewana3_1875	0.49	-1.5
2,221,982	-		Shewana3_1875	0.75	+1.5
2,222,004	-		Shewana3_1875	0.75	-0.3
2,222,113	+		Shewana3_1875	0.80	+2.5
2,222,446	-				-0.7
2,222,499	-				-0.5
2,222,807	-				+0.2
2,222,985	-		Shewana3_1876	0.16	-0.2
2,223,096	+		Shewana3_1876	0.22	-1.0
2,223,204	+		Shewana3_1876	0.28	-1.0
2,223,288	-		Shewana3_1876	0.32	+1.5
2,223,320	+		Shewana3_1876	0.34	+0.2
2,223,538	+		Shewana3_1876	0.46	-0.7
2,223,546	-		Shewana3_1876	0.46	-1.3