Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1774 and Shewana3_1775 are separated by 206 nucleotides Shewana3_1775 and Shewana3_1776 are separated by 15 nucleotides Shewana3_1776 and Shewana3_1777 are separated by 275 nucleotides Shewana3_1777 and Shewana3_1778 are separated by 28 nucleotides
Shewana3_1774: Shewana3_1774 - paraquat-inducible protein A (RefSeq), at 2,089,915 to 2,090,550
_1774
Shewana3_1775: Shewana3_1775 - YebG family protein (RefSeq), at 2,090,757 to 2,091,056
_1775
Shewana3_1776: Shewana3_1776 - putative GAF sensor protein (RefSeq), at 2,091,072 to 2,091,530
_1776
Shewana3_1777: Shewana3_1777 - putative solute/DNA competence effector (RefSeq), at 2,091,806 to 2,092,450
_1777
Shewana3_1778: Shewana3_1778 - carboxy-terminal protease (RefSeq), at 2,092,479 to 2,094,530
_1778
Position (kb)
2091
2092 Strain fitness (log2 ratio)
-1
0
1
2 at 2090.280 kb on + strand, within Shewana3_1774 at 2090.389 kb on - strand, within Shewana3_1774 at 2090.690 kb on - strand at 2090.847 kb on + strand, within Shewana3_1775 at 2090.875 kb on - strand, within Shewana3_1775 at 2091.269 kb on - strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776 at 2091.281 kb on + strand, within Shewana3_1776 at 2091.567 kb on + strand at 2091.586 kb on - strand at 2091.629 kb on - strand at 2091.725 kb on + strand at 2091.954 kb on + strand, within Shewana3_1777 at 2092.047 kb on + strand, within Shewana3_1777 at 2092.076 kb on + strand, within Shewana3_1777 at 2092.402 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 2,090,280 + Shewana3_1774 0.57 +1.4 2,090,389 - Shewana3_1774 0.75 +0.4 2,090,690 - -0.3 2,090,847 + Shewana3_1775 0.30 +1.2 2,090,875 - Shewana3_1775 0.39 +0.3 2,091,269 - Shewana3_1776 0.43 +2.4 2,091,281 + Shewana3_1776 0.46 -1.3 2,091,281 + Shewana3_1776 0.46 +1.3 2,091,281 + Shewana3_1776 0.46 +1.4 2,091,567 + -1.0 2,091,586 - +2.4 2,091,629 - +1.4 2,091,725 + -0.9 2,091,954 + Shewana3_1777 0.23 -0.8 2,092,047 + Shewana3_1777 0.37 -0.3 2,092,076 + Shewana3_1777 0.42 -0.4 2,092,402 + -0.3
Or see this region's nucleotide sequence