Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1737 and Shewana3_1738 are separated by 88 nucleotides Shewana3_1738 and Shewana3_1739 are separated by 138 nucleotides Shewana3_1739 and Shewana3_1740 are separated by 290 nucleotides
Shewana3_1737: Shewana3_1737 - FAD linked oxidase domain-containing protein (RefSeq), at 2,046,778 to 2,049,819
_1737
Shewana3_1738: Shewana3_1738 - hypothetical protein (RefSeq), at 2,049,908 to 2,050,396
_1738
Shewana3_1739: Shewana3_1739 - MarR family transcriptional regulator (RefSeq), at 2,050,535 to 2,050,966
_1739
Shewana3_1740: Shewana3_1740 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 2,051,257 to 2,055,042
_1740
Position (kb)
2050
2051 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2050.046 kb on + strand, within Shewana3_1738 at 2050.054 kb on - strand, within Shewana3_1738 at 2050.056 kb on + strand, within Shewana3_1738 at 2050.056 kb on + strand, within Shewana3_1738 at 2050.840 kb on + strand, within Shewana3_1739 at 2051.367 kb on + strand at 2051.367 kb on + strand at 2051.375 kb on - strand at 2051.375 kb on - strand at 2051.741 kb on + strand, within Shewana3_1740 at 2051.796 kb on + strand, within Shewana3_1740 at 2051.927 kb on - strand, within Shewana3_1740 at 2051.960 kb on - strand, within Shewana3_1740
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 2,050,046 + Shewana3_1738 0.28 -0.0 2,050,054 - Shewana3_1738 0.30 +0.9 2,050,056 + Shewana3_1738 0.30 +0.5 2,050,056 + Shewana3_1738 0.30 +0.5 2,050,840 + Shewana3_1739 0.71 -1.0 2,051,367 + -0.0 2,051,367 + +3.8 2,051,375 - +1.5 2,051,375 - -0.9 2,051,741 + Shewana3_1740 0.13 -0.5 2,051,796 + Shewana3_1740 0.14 +0.0 2,051,927 - Shewana3_1740 0.18 +1.5 2,051,960 - Shewana3_1740 0.19 +0.8
Or see this region's nucleotide sequence