Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1624
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,911,350 | + | +0.3 | |||
1,911,358 | - | +2.4 | |||
1,911,446 | + | +0.2 | |||
1,912,043 | + | +0.3 | |||
1,912,122 | + | Shewana3_1624 | 0.12 | +1.1 | |
1,912,368 | + | Shewana3_1624 | 0.25 | +0.9 | |
1,912,444 | - | Shewana3_1624 | 0.29 | +0.8 | |
1,912,677 | + | Shewana3_1624 | 0.41 | +1.4 | |
1,912,736 | - | Shewana3_1624 | 0.44 | +2.4 | |
1,912,932 | + | Shewana3_1624 | 0.55 | +1.0 | |
1,913,541 | + | Shewana3_1624 | 0.87 | +1.4 | |
1,913,894 | - | +0.6 | |||
1,914,012 | + | +0.8 | |||
1,914,371 | - | Shewana3_1625 | 0.30 | -1.1 | |
1,914,473 | - | Shewana3_1625 | 0.40 | +0.1 |
Or see this region's nucleotide sequence