Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1570
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,837,886 | + | -0.5 | |||
1,838,254 | - | Shewana3_1570 | 0.34 | +0.3 | |
1,838,291 | + | Shewana3_1570 | 0.41 | -1.0 | |
1,838,311 | + | Shewana3_1570 | 0.45 | -0.4 | |
1,838,489 | - | Shewana3_1570 | 0.81 | +0.7 | |
1,838,639 | - | +0.3 | |||
1,838,704 | + | -1.9 | |||
1,838,783 | + | +1.3 | |||
1,839,103 | + | Shewana3_1571 | 0.26 | -0.0 | |
1,839,103 | + | Shewana3_1571 | 0.26 | -1.7 | |
1,839,103 | + | Shewana3_1571 | 0.26 | +0.2 | |
1,839,115 | + | Shewana3_1571 | 0.27 | -1.0 | |
1,839,123 | + | Shewana3_1571 | 0.27 | +0.7 | |
1,839,267 | + | Shewana3_1571 | 0.39 | -1.2 |
Or see this region's nucleotide sequence