Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1470 and Shewana3_1471 are separated by 64 nucleotides Shewana3_1471 and Shewana3_1472 are separated by 55 nucleotides Shewana3_1472 and Shewana3_1473 are separated by 3 nucleotides
Shewana3_1470: Shewana3_1470 - major facilitator transporter (RefSeq), at 1,708,987 to 1,710,156
_1470
Shewana3_1471: Shewana3_1471 - ATP-NAD/AcoX kinase (RefSeq), at 1,710,221 to 1,711,363
_1471
Shewana3_1472: Shewana3_1472 - hypothetical protein (RefSeq), at 1,711,419 to 1,711,700
_1472
Shewana3_1473: Shewana3_1473 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 1,711,704 to 1,712,312
_1473
Position (kb)
1710
1711
1712 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1709.305 kb on - strand, within Shewana3_1470 at 1709.443 kb on + strand, within Shewana3_1470 at 1709.481 kb on - strand, within Shewana3_1470 at 1709.586 kb on + strand, within Shewana3_1470 at 1709.669 kb on + strand, within Shewana3_1470 at 1709.669 kb on + strand, within Shewana3_1470 at 1709.677 kb on - strand, within Shewana3_1470 at 1709.677 kb on - strand, within Shewana3_1470 at 1709.974 kb on + strand, within Shewana3_1470 at 1710.065 kb on + strand at 1710.092 kb on - strand at 1710.222 kb on - strand at 1710.222 kb on - strand at 1710.276 kb on + strand at 1710.342 kb on - strand, within Shewana3_1471 at 1710.510 kb on - strand, within Shewana3_1471 at 1710.648 kb on + strand, within Shewana3_1471 at 1710.675 kb on + strand, within Shewana3_1471 at 1710.690 kb on - strand, within Shewana3_1471 at 1710.781 kb on + strand, within Shewana3_1471 at 1710.785 kb on + strand, within Shewana3_1471 at 1710.833 kb on - strand, within Shewana3_1471 at 1710.979 kb on + strand, within Shewana3_1471 at 1711.004 kb on - strand, within Shewana3_1471 at 1711.068 kb on + strand, within Shewana3_1471 at 1711.438 kb on - strand at 1711.449 kb on - strand, within Shewana3_1472 at 1711.464 kb on + strand, within Shewana3_1472 at 1711.597 kb on + strand, within Shewana3_1472 at 1711.597 kb on + strand, within Shewana3_1472 at 1711.858 kb on - strand, within Shewana3_1473 at 1711.906 kb on - strand, within Shewana3_1473 at 1711.935 kb on + strand, within Shewana3_1473 at 1711.983 kb on + strand, within Shewana3_1473 at 1712.058 kb on + strand, within Shewana3_1473 at 1712.217 kb on - strand, within Shewana3_1473 at 1712.227 kb on - strand, within Shewana3_1473 at 1712.314 kb on - strand at 1712.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 1,709,305 - Shewana3_1470 0.27 +0.2 1,709,443 + Shewana3_1470 0.39 -0.1 1,709,481 - Shewana3_1470 0.42 +0.2 1,709,586 + Shewana3_1470 0.51 -0.4 1,709,669 + Shewana3_1470 0.58 +0.2 1,709,669 + Shewana3_1470 0.58 -0.1 1,709,677 - Shewana3_1470 0.59 +0.8 1,709,677 - Shewana3_1470 0.59 +2.2 1,709,974 + Shewana3_1470 0.84 -0.6 1,710,065 + +0.9 1,710,092 - +0.2 1,710,222 - +0.2 1,710,222 - +0.6 1,710,276 + +0.3 1,710,342 - Shewana3_1471 0.11 -0.4 1,710,510 - Shewana3_1471 0.25 -0.4 1,710,648 + Shewana3_1471 0.37 +0.4 1,710,675 + Shewana3_1471 0.40 -1.4 1,710,690 - Shewana3_1471 0.41 -0.7 1,710,781 + Shewana3_1471 0.49 -1.2 1,710,785 + Shewana3_1471 0.49 -0.3 1,710,833 - Shewana3_1471 0.54 +1.2 1,710,979 + Shewana3_1471 0.66 -0.3 1,711,004 - Shewana3_1471 0.69 -0.5 1,711,068 + Shewana3_1471 0.74 -0.6 1,711,438 - +0.2 1,711,449 - Shewana3_1472 0.11 -0.4 1,711,464 + Shewana3_1472 0.16 +0.2 1,711,597 + Shewana3_1472 0.63 -1.8 1,711,597 + Shewana3_1472 0.63 -1.1 1,711,858 - Shewana3_1473 0.25 -1.8 1,711,906 - Shewana3_1473 0.33 -0.6 1,711,935 + Shewana3_1473 0.38 +0.2 1,711,983 + Shewana3_1473 0.46 -0.2 1,712,058 + Shewana3_1473 0.58 -0.1 1,712,217 - Shewana3_1473 0.84 +0.2 1,712,227 - Shewana3_1473 0.86 +0.2 1,712,314 - -1.8 1,712,321 - -0.0
Or see this region's nucleotide sequence