Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1443 and Shewana3_1444 are separated by 584 nucleotides Shewana3_1444 and Shewana3_1445 are separated by 25 nucleotides Shewana3_1445 and Shewana3_1446 are separated by 58 nucleotides
Shewana3_1443: Shewana3_1443 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,671,430 to 1,673,859
_1443
Shewana3_1444: Shewana3_1444 - rhodanese domain-containing protein (RefSeq), at 1,674,444 to 1,674,842
_1444
Shewana3_1445: Shewana3_1445 - hypothetical protein (RefSeq), at 1,674,868 to 1,675,080
_1445
Shewana3_1446: Shewana3_1446 - acriflavin resistance protein (RefSeq), at 1,675,139 to 1,678,369
_1446
Position (kb)
1674
1675 Strain fitness (log2 ratio)
-2
-1
0
1 at 1673.539 kb on - strand, within Shewana3_1443 at 1673.581 kb on + strand, within Shewana3_1443 at 1673.589 kb on - strand, within Shewana3_1443 at 1673.677 kb on + strand at 1673.685 kb on - strand at 1673.783 kb on + strand at 1674.482 kb on - strand at 1674.544 kb on - strand, within Shewana3_1444 at 1674.679 kb on - strand, within Shewana3_1444 at 1675.108 kb on - strand at 1675.240 kb on - strand at 1675.422 kb on - strand at 1675.477 kb on + strand, within Shewana3_1446 at 1675.556 kb on - strand, within Shewana3_1446 at 1675.670 kb on + strand, within Shewana3_1446 at 1675.700 kb on - strand, within Shewana3_1446 at 1675.700 kb on - strand, within Shewana3_1446
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 1,673,539 - Shewana3_1443 0.87 -0.9 1,673,581 + Shewana3_1443 0.89 +0.2 1,673,589 - Shewana3_1443 0.89 +0.2 1,673,677 + -0.8 1,673,685 - -0.0 1,673,783 + +0.3 1,674,482 - +1.1 1,674,544 - Shewana3_1444 0.25 -1.0 1,674,679 - Shewana3_1444 0.59 -1.5 1,675,108 - -0.1 1,675,240 - -0.3 1,675,422 - -0.6 1,675,477 + Shewana3_1446 0.10 +0.1 1,675,556 - Shewana3_1446 0.13 -1.8 1,675,670 + Shewana3_1446 0.16 -1.0 1,675,700 - Shewana3_1446 0.17 +0.4 1,675,700 - Shewana3_1446 0.17 +0.5
Or see this region's nucleotide sequence