Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1444

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1443 and Shewana3_1444 are separated by 584 nucleotidesShewana3_1444 and Shewana3_1445 are separated by 25 nucleotidesShewana3_1445 and Shewana3_1446 are separated by 58 nucleotides Shewana3_1443: Shewana3_1443 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,671,430 to 1,673,859 _1443 Shewana3_1444: Shewana3_1444 - rhodanese domain-containing protein (RefSeq), at 1,674,444 to 1,674,842 _1444 Shewana3_1445: Shewana3_1445 - hypothetical protein (RefSeq), at 1,674,868 to 1,675,080 _1445 Shewana3_1446: Shewana3_1446 - acriflavin resistance protein (RefSeq), at 1,675,139 to 1,678,369 _1446 Position (kb) 1674 1675Strain fitness (log2 ratio) -2 -1 0 1at 1673.539 kb on - strand, within Shewana3_1443at 1673.581 kb on + strand, within Shewana3_1443at 1673.589 kb on - strand, within Shewana3_1443at 1673.677 kb on + strandat 1673.685 kb on - strandat 1673.783 kb on + strandat 1674.482 kb on - strandat 1674.544 kb on - strand, within Shewana3_1444at 1674.679 kb on - strand, within Shewana3_1444at 1675.108 kb on - strandat 1675.240 kb on - strandat 1675.422 kb on - strandat 1675.477 kb on + strand, within Shewana3_1446at 1675.556 kb on - strand, within Shewana3_1446at 1675.670 kb on + strand, within Shewana3_1446at 1675.700 kb on - strand, within Shewana3_1446at 1675.700 kb on - strand, within Shewana3_1446

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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1,673,539 - Shewana3_1443 0.87 -0.9
1,673,581 + Shewana3_1443 0.89 +0.2
1,673,589 - Shewana3_1443 0.89 +0.2
1,673,677 + -0.8
1,673,685 - -0.0
1,673,783 + +0.3
1,674,482 - +1.1
1,674,544 - Shewana3_1444 0.25 -1.0
1,674,679 - Shewana3_1444 0.59 -1.5
1,675,108 - -0.1
1,675,240 - -0.3
1,675,422 - -0.6
1,675,477 + Shewana3_1446 0.10 +0.1
1,675,556 - Shewana3_1446 0.13 -1.8
1,675,670 + Shewana3_1446 0.16 -1.0
1,675,700 - Shewana3_1446 0.17 +0.4
1,675,700 - Shewana3_1446 0.17 +0.5

Or see this region's nucleotide sequence