Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1369
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,580,143 | + | Shewana3_1367 | 0.39 | +1.2 | |
1,580,344 | - | Shewana3_1367 | 0.80 | +0.8 | |
1,580,446 | - | +2.2 | |||
1,580,481 | - | -0.4 | |||
1,580,623 | + | +0.0 | |||
1,580,623 | + | -0.4 | |||
1,580,653 | - | Shewana3_1368 | 0.14 | -0.8 | |
1,580,881 | + | Shewana3_1368 | 0.71 | -1.6 | |
1,580,889 | - | Shewana3_1368 | 0.73 | -1.0 | |
1,581,108 | + | Shewana3_1369 | 0.27 | +0.1 | |
1,581,116 | - | Shewana3_1369 | 0.29 | +0.2 | |
1,581,439 | + | -1.3 | |||
1,581,683 | + | Shewana3_1370 | 0.16 | -0.5 | |
1,581,854 | - | Shewana3_1370 | 0.25 | +0.2 | |
1,582,130 | - | Shewana3_1370 | 0.38 | +0.9 | |
1,582,136 | + | Shewana3_1370 | 0.38 | -2.7 |
Or see this region's nucleotide sequence