Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1095
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 1,288,909 | + | glyA | Shewana3_1094 | 0.39 | +0.3 |
| 1,289,252 | + | glyA | Shewana3_1094 | 0.67 | +1.1 |
| 1,289,266 | + | glyA | Shewana3_1094 | 0.68 | +1.0 |
| 1,289,266 | + | glyA | Shewana3_1094 | 0.68 | +0.3 |
| 1,289,423 | + | glyA | Shewana3_1094 | 0.80 | -0.0 |
| 1,289,470 | - | glyA | Shewana3_1094 | 0.84 | +0.0 |
| 1,289,493 | + | glyA | Shewana3_1094 | 0.86 | +0.7 |
| 1,289,594 | + | +0.7 | |||
| 1,289,642 | - | +0.5 | |||
| 1,289,702 | + | +1.7 | |||
| 1,289,720 | - | -1.6 | |||
| 1,289,727 | - | +1.5 | |||
| 1,289,877 | + | +0.1 | |||
| 1,289,877 | + | -0.5 | |||
| 1,290,014 | + | nrdR | Shewana3_1095 | 0.29 | +0.7 |
| 1,290,086 | + | nrdR | Shewana3_1095 | 0.45 | +0.5 |
| 1,290,101 | + | nrdR | Shewana3_1095 | 0.49 | +0.6 |
| 1,290,171 | + | nrdR | Shewana3_1095 | 0.64 | +1.2 |
| 1,290,351 | + | -0.3 |
Or see this region's nucleotide sequence