Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0972 and Shewana3_0973 are separated by 680 nucleotides Shewana3_0973 and Shewana3_0974 are separated by 11 nucleotides Shewana3_0974 and Shewana3_0975 overlap by 4 nucleotides
Shewana3_0972: Shewana3_0972 - hypothetical protein (RefSeq), at 1,142,469 to 1,143,170
_0972
Shewana3_0973: Shewana3_0973 - endonuclease/exonuclease/phosphatase (RefSeq), at 1,143,851 to 1,144,984
_0973
Shewana3_0974: Shewana3_0974 - hypothetical protein (RefSeq), at 1,144,996 to 1,145,811
_0974
Shewana3_0975: Shewana3_0975 - hypothetical protein (RefSeq), at 1,145,808 to 1,146,689
_0975
Position (kb)
1143
1144
1145 Strain fitness (log2 ratio)
-1
0
1 at 1143.021 kb on - strand, within Shewana3_0972 at 1143.021 kb on - strand, within Shewana3_0972 at 1143.122 kb on - strand at 1143.365 kb on - strand at 1144.072 kb on - strand, within Shewana3_0973 at 1144.072 kb on - strand, within Shewana3_0973 at 1144.292 kb on - strand, within Shewana3_0973 at 1144.369 kb on - strand, within Shewana3_0973 at 1144.381 kb on + strand, within Shewana3_0973 at 1144.524 kb on + strand, within Shewana3_0973 at 1144.811 kb on + strand, within Shewana3_0973 at 1144.821 kb on + strand, within Shewana3_0973 at 1144.893 kb on + strand at 1144.901 kb on - strand at 1144.933 kb on + strand at 1145.120 kb on + strand, within Shewana3_0974 at 1145.173 kb on + strand, within Shewana3_0974 at 1145.392 kb on + strand, within Shewana3_0974 at 1145.665 kb on - strand, within Shewana3_0974 at 1145.833 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 1,143,021 - Shewana3_0972 0.79 +0.2 1,143,021 - Shewana3_0972 0.79 +0.7 1,143,122 - +0.7 1,143,365 - -0.5 1,144,072 - Shewana3_0973 0.19 +1.2 1,144,072 - Shewana3_0973 0.19 -0.8 1,144,292 - Shewana3_0973 0.39 -0.0 1,144,369 - Shewana3_0973 0.46 -0.2 1,144,381 + Shewana3_0973 0.47 +1.7 1,144,524 + Shewana3_0973 0.59 -1.3 1,144,811 + Shewana3_0973 0.85 +0.3 1,144,821 + Shewana3_0973 0.86 +0.8 1,144,893 + +0.9 1,144,901 - -1.7 1,144,933 + +0.0 1,145,120 + Shewana3_0974 0.15 +0.1 1,145,173 + Shewana3_0974 0.22 +0.0 1,145,392 + Shewana3_0974 0.49 -0.6 1,145,665 - Shewana3_0974 0.82 +0.4 1,145,833 + -0.7
Or see this region's nucleotide sequence