Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0961

Experiment: Rifampicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.001 mg/ml
1,127,392	+				+1.0
1,127,530	-				+3.0
1,127,716	+				+1.0
1,127,730	+				-1.3
1,127,738	-				+0.2
1,127,755	+				+2.0
1,127,844	-				-0.3
1,127,871	+		Shewana3_0961	0.10	+0.4
1,127,911	+				+2.0
1,127,911	+		Shewana3_0961	0.14	+0.1
1,127,911	-		Shewana3_0961	0.14	+0.0
1,127,965	+		Shewana3_0961	0.19	+2.0
1,127,968	-		Shewana3_0961	0.19	-2.0
1,127,992	+		Shewana3_0961	0.22	+2.0
1,127,998	+		Shewana3_0961	0.22	+1.0
1,128,006	+		Shewana3_0961	0.23	-1.3
1,128,020	+		Shewana3_0961	0.24	+2.0
1,128,029	-		Shewana3_0961	0.25	-0.8
1,128,029	-		Shewana3_0961	0.25	+0.2
1,128,031	+		Shewana3_0961	0.25	+1.0
1,128,049	-		Shewana3_0961	0.27	-1.2
1,128,056	-		Shewana3_0961	0.28	-2.0
1,128,080	-		Shewana3_0961	0.30	-0.3
1,128,080	-		Shewana3_0961	0.30	-0.0
1,128,086	+		Shewana3_0961	0.30	+2.0
1,128,094	-		Shewana3_0961	0.31	-0.2
1,128,094	-		Shewana3_0961	0.31	-1.6
1,128,172	-		Shewana3_0961	0.38	-1.2
1,128,257	+		Shewana3_0961	0.46	-0.8
1,128,257	+		Shewana3_0961	0.46	+1.2
1,128,257	+		Shewana3_0961	0.46	+1.0
1,128,265	-		Shewana3_0961	0.47	-0.8
1,128,313	+		Shewana3_0961	0.52	+2.0
1,128,322	+		Shewana3_0961	0.53	+0.4
1,128,322	-		Shewana3_0961	0.53	+0.2
1,128,330	-		Shewana3_0961	0.53	-1.5
1,128,330	-		Shewana3_0961	0.53	-1.0
1,128,330	-		Shewana3_0961	0.53	+0.6
1,128,332	+		Shewana3_0961	0.54	+0.7
1,128,340	-		Shewana3_0961	0.54	-0.6
1,128,340	-		Shewana3_0961	0.54	-0.3
1,128,340	-		Shewana3_0961	0.54	+1.5
1,128,379	-		Shewana3_0961	0.58	+0.5
1,128,486	-		Shewana3_0961	0.68	-0.8
1,128,496	+		Shewana3_0961	0.69	+1.0
1,128,504	-		Shewana3_0961	0.70	+0.0
1,128,588	+		Shewana3_0961	0.78	+2.0
1,128,594	+		Shewana3_0961	0.78	+1.0
1,128,633	+		Shewana3_0961	0.82	+0.3
1,128,660	+		Shewana3_0961	0.84	+1.7
1,128,660	+		Shewana3_0961	0.84	-1.5
1,128,668	-		Shewana3_0961	0.85	-0.9
1,128,682	+		Shewana3_0961	0.86	-1.7
1,128,689	+		Shewana3_0961	0.87	-0.9
1,128,697	-		Shewana3_0961	0.88	-1.2
1,128,697	-		Shewana3_0961	0.88	-0.4
1,128,697	-		Shewana3_0961	0.88	-0.9
1,128,700	-		Shewana3_0961	0.88	+0.1
1,128,700	-		Shewana3_0961	0.88	+0.5
1,128,700	-		Shewana3_0961	0.88	+0.5
1,128,701	-		Shewana3_0961	0.88	-1.5
1,128,704	+		Shewana3_0961	0.88	-0.8
1,128,704	+		Shewana3_0961	0.88	+0.6
1,128,704	+		Shewana3_0961	0.88	-0.1
1,128,712	-		Shewana3_0961	0.89	+0.4
1,128,712	-		Shewana3_0961	0.89	-1.0
1,128,873	-				-1.2
1,128,917	+				-0.0
1,128,925	-				-1.2
1,128,925	-				+1.0
1,128,980	+				+0.9
1,128,981	-				-2.5
1,128,998	+				-0.1
1,128,999	+				+0.3
1,128,999	+				-0.2
1,128,999	+				-0.8
1,128,999	+				+0.1
1,128,999	+				-0.6
1,129,005	+				-0.1
1,129,006	-				-1.3
1,129,007	-				-0.8
1,129,031	-				-1.5
1,129,125	+				-1.1
1,129,174	-				-2.6
1,129,297	-				+0.5
1,129,376	-				+1.5
1,129,383	-				-1.9
1,129,401	-				+0.5
1,129,413	-				-0.9
1,129,464	+				-0.9
1,129,516	-		Shewana3_0962	0.12	-1.8
1,129,783	-		Shewana3_0962	0.32	-0.4
1,129,793	-		Shewana3_0962	0.32	-0.5