Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0959

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0958 and dnaK are separated by 285 nucleotidesdnaK and Shewana3_0960 are separated by 109 nucleotides Shewana3_0958: Shewana3_0958 - hypothetical protein (RefSeq), at 1,123,006 to 1,123,926 _0958 Shewana3_0959: dnaK - molecular chaperone DnaK (RefSeq), at 1,124,212 to 1,126,131 dnaK Shewana3_0960: Shewana3_0960 - chaperone protein DnaJ (RefSeq), at 1,126,241 to 1,127,374 _0960 Position (kb) 1124 1125 1126 1127Strain fitness (log2 ratio) -1 0 1at 1123.248 kb on - strand, within Shewana3_0958at 1123.266 kb on + strand, within Shewana3_0958at 1123.293 kb on + strand, within Shewana3_0958at 1123.316 kb on - strand, within Shewana3_0958at 1123.324 kb on - strand, within Shewana3_0958at 1123.326 kb on + strand, within Shewana3_0958at 1123.433 kb on + strand, within Shewana3_0958at 1123.523 kb on - strand, within Shewana3_0958at 1123.652 kb on - strand, within Shewana3_0958at 1123.655 kb on + strand, within Shewana3_0958at 1123.663 kb on - strand, within Shewana3_0958at 1123.685 kb on + strand, within Shewana3_0958at 1123.765 kb on + strand, within Shewana3_0958at 1123.803 kb on - strand, within Shewana3_0958at 1123.884 kb on - strandat 1123.928 kb on + strandat 1123.975 kb on - strandat 1124.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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1,123,248 - Shewana3_0958 0.26 +0.6
1,123,266 + Shewana3_0958 0.28 +0.1
1,123,293 + Shewana3_0958 0.31 -1.4
1,123,316 - Shewana3_0958 0.34 -0.1
1,123,324 - Shewana3_0958 0.35 -0.2
1,123,326 + Shewana3_0958 0.35 -0.4
1,123,433 + Shewana3_0958 0.46 -0.8
1,123,523 - Shewana3_0958 0.56 +0.1
1,123,652 - Shewana3_0958 0.70 -1.2
1,123,655 + Shewana3_0958 0.70 +1.0
1,123,663 - Shewana3_0958 0.71 -0.7
1,123,685 + Shewana3_0958 0.74 -0.2
1,123,765 + Shewana3_0958 0.82 -0.3
1,123,803 - Shewana3_0958 0.87 -1.3
1,123,884 - -0.5
1,123,928 + +0.5
1,123,975 - -1.6
1,124,118 - +0.7

Or see this region's nucleotide sequence