Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0909 and Shewana3_0910 are separated by 582 nucleotides Shewana3_0910 and Shewana3_0912 are separated by 560 nucleotides
Shewana3_0909: Shewana3_0909 - hypothetical protein (RefSeq), at 1,060,713 to 1,061,306
_0909
Shewana3_0910: Shewana3_0910 - no description, at 1,061,889 to 1,063,363
_0910
Shewana3_0912: Shewana3_0912 - aromatic amino acid permease (RefSeq), at 1,063,924 to 1,065,099
_0912
Position (kb)
1061
1062
1063
1064 Strain fitness (log2 ratio)
-1
0
1
2 at 1061.723 kb on - strand at 1061.821 kb on - strand at 1061.843 kb on - strand at 1061.973 kb on + strand at 1061.981 kb on - strand at 1062.015 kb on + strand at 1062.030 kb on - strand at 1062.080 kb on - strand, within Shewana3_0910 at 1062.179 kb on - strand, within Shewana3_0910 at 1062.263 kb on + strand, within Shewana3_0910 at 1062.333 kb on + strand, within Shewana3_0910 at 1062.341 kb on - strand, within Shewana3_0910 at 1062.418 kb on + strand, within Shewana3_0910 at 1062.740 kb on + strand, within Shewana3_0910 at 1062.740 kb on + strand, within Shewana3_0910 at 1062.830 kb on - strand, within Shewana3_0910 at 1062.934 kb on + strand, within Shewana3_0910 at 1062.973 kb on - strand, within Shewana3_0910 at 1062.988 kb on - strand, within Shewana3_0910 at 1063.158 kb on - strand, within Shewana3_0910 at 1063.255 kb on + strand at 1063.255 kb on + strand at 1063.255 kb on + strand at 1063.255 kb on + strand at 1063.350 kb on + strand at 1063.368 kb on - strand at 1063.397 kb on + strand at 1063.593 kb on + strand at 1063.603 kb on + strand at 1063.694 kb on + strand at 1063.986 kb on - strand at 1064.061 kb on - strand, within Shewana3_0912 at 1064.078 kb on + strand, within Shewana3_0912 at 1064.154 kb on - strand, within Shewana3_0912 at 1064.294 kb on + strand, within Shewana3_0912 at 1064.317 kb on + strand, within Shewana3_0912
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 1,061,723 - -0.7 1,061,821 - -1.1 1,061,843 - -0.2 1,061,973 + -0.1 1,061,981 - +0.1 1,062,015 + +0.1 1,062,030 - -0.7 1,062,080 - Shewana3_0910 0.13 -0.8 1,062,179 - Shewana3_0910 0.20 -0.1 1,062,263 + Shewana3_0910 0.25 -0.3 1,062,333 + Shewana3_0910 0.30 -0.4 1,062,341 - Shewana3_0910 0.31 -0.2 1,062,418 + Shewana3_0910 0.36 -0.2 1,062,740 + Shewana3_0910 0.58 +0.2 1,062,740 + Shewana3_0910 0.58 +0.0 1,062,830 - Shewana3_0910 0.64 -0.3 1,062,934 + Shewana3_0910 0.71 -0.0 1,062,973 - Shewana3_0910 0.73 -0.8 1,062,988 - Shewana3_0910 0.75 -0.6 1,063,158 - Shewana3_0910 0.86 -1.3 1,063,255 + +0.3 1,063,255 + +1.8 1,063,255 + +0.5 1,063,255 + +0.0 1,063,350 + -0.2 1,063,368 - -1.3 1,063,397 + +0.3 1,063,593 + -0.8 1,063,603 + -0.7 1,063,694 + +0.5 1,063,986 - -0.5 1,064,061 - Shewana3_0912 0.12 -0.3 1,064,078 + Shewana3_0912 0.13 -1.2 1,064,154 - Shewana3_0912 0.20 +2.6 1,064,294 + Shewana3_0912 0.31 -0.3 1,064,317 + Shewana3_0912 0.33 -0.6
Or see this region's nucleotide sequence