Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0892

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0891 and Shewana3_0892 are separated by 247 nucleotidesShewana3_0892 and Shewana3_0893 are separated by 12 nucleotides Shewana3_0891: Shewana3_0891 - AraC family transcriptional regulator (RefSeq), at 1,037,402 to 1,038,280 _0891 Shewana3_0892: Shewana3_0892 - phosphate transporter (RefSeq), at 1,038,528 to 1,039,997 _0892 Shewana3_0893: Shewana3_0893 - hypothetical protein (RefSeq), at 1,040,010 to 1,040,960 _0893 Position (kb) 1038 1039 1040Strain fitness (log2 ratio) -2 -1 0 1 2at 1037.578 kb on + strand, within Shewana3_0891at 1037.617 kb on + strand, within Shewana3_0891at 1037.644 kb on + strand, within Shewana3_0891at 1037.780 kb on - strand, within Shewana3_0891at 1038.116 kb on + strand, within Shewana3_0891at 1038.158 kb on - strand, within Shewana3_0891at 1038.211 kb on + strandat 1038.366 kb on + strandat 1038.565 kb on - strandat 1038.748 kb on + strand, within Shewana3_0892at 1038.964 kb on + strand, within Shewana3_0892at 1038.964 kb on + strand, within Shewana3_0892at 1038.964 kb on + strand, within Shewana3_0892at 1038.972 kb on - strand, within Shewana3_0892at 1039.076 kb on + strand, within Shewana3_0892at 1039.238 kb on + strand, within Shewana3_0892at 1039.388 kb on - strand, within Shewana3_0892at 1039.437 kb on - strand, within Shewana3_0892at 1039.507 kb on + strand, within Shewana3_0892at 1039.679 kb on - strand, within Shewana3_0892at 1039.687 kb on + strand, within Shewana3_0892at 1039.842 kb on - strand, within Shewana3_0892at 1039.925 kb on + strandat 1039.944 kb on + strandat 1039.959 kb on + strandat 1040.207 kb on + strand, within Shewana3_0893at 1040.429 kb on - strand, within Shewana3_0893at 1040.526 kb on + strand, within Shewana3_0893at 1040.749 kb on - strand, within Shewana3_0893

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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1,037,578 + Shewana3_0891 0.20 +0.4
1,037,617 + Shewana3_0891 0.24 -2.1
1,037,644 + Shewana3_0891 0.28 +0.4
1,037,780 - Shewana3_0891 0.43 -0.1
1,038,116 + Shewana3_0891 0.81 -0.9
1,038,158 - Shewana3_0891 0.86 -1.6
1,038,211 + -0.6
1,038,366 + +0.0
1,038,565 - +0.9
1,038,748 + Shewana3_0892 0.15 -0.1
1,038,964 + Shewana3_0892 0.30 +0.8
1,038,964 + Shewana3_0892 0.30 -1.1
1,038,964 + Shewana3_0892 0.30 -0.1
1,038,972 - Shewana3_0892 0.30 +0.4
1,039,076 + Shewana3_0892 0.37 -0.6
1,039,238 + Shewana3_0892 0.48 +0.4
1,039,388 - Shewana3_0892 0.59 +0.4
1,039,437 - Shewana3_0892 0.62 -0.4
1,039,507 + Shewana3_0892 0.67 -0.2
1,039,679 - Shewana3_0892 0.78 -0.8
1,039,687 + Shewana3_0892 0.79 -0.4
1,039,842 - Shewana3_0892 0.89 +1.9
1,039,925 + -0.0
1,039,944 + -0.5
1,039,959 + +0.4
1,040,207 + Shewana3_0893 0.21 +0.9
1,040,429 - Shewana3_0893 0.44 -0.4
1,040,526 + Shewana3_0893 0.54 -1.2
1,040,749 - Shewana3_0893 0.78 -0.0

Or see this region's nucleotide sequence