Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0892
Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rifampicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,037,578 | + | Shewana3_0891 | 0.20 | +0.4 | |
1,037,617 | + | Shewana3_0891 | 0.24 | -2.1 | |
1,037,644 | + | Shewana3_0891 | 0.28 | +0.4 | |
1,037,780 | - | Shewana3_0891 | 0.43 | -0.1 | |
1,038,116 | + | Shewana3_0891 | 0.81 | -0.9 | |
1,038,158 | - | Shewana3_0891 | 0.86 | -1.6 | |
1,038,211 | + | -0.6 | |||
1,038,366 | + | +0.0 | |||
1,038,565 | - | +0.9 | |||
1,038,748 | + | Shewana3_0892 | 0.15 | -0.1 | |
1,038,964 | + | Shewana3_0892 | 0.30 | +0.8 | |
1,038,964 | + | Shewana3_0892 | 0.30 | -1.1 | |
1,038,964 | + | Shewana3_0892 | 0.30 | -0.1 | |
1,038,972 | - | Shewana3_0892 | 0.30 | +0.4 | |
1,039,076 | + | Shewana3_0892 | 0.37 | -0.6 | |
1,039,238 | + | Shewana3_0892 | 0.48 | +0.4 | |
1,039,388 | - | Shewana3_0892 | 0.59 | +0.4 | |
1,039,437 | - | Shewana3_0892 | 0.62 | -0.4 | |
1,039,507 | + | Shewana3_0892 | 0.67 | -0.2 | |
1,039,679 | - | Shewana3_0892 | 0.78 | -0.8 | |
1,039,687 | + | Shewana3_0892 | 0.79 | -0.4 | |
1,039,842 | - | Shewana3_0892 | 0.89 | +1.9 | |
1,039,925 | + | -0.0 | |||
1,039,944 | + | -0.5 | |||
1,039,959 | + | +0.4 | |||
1,040,207 | + | Shewana3_0893 | 0.21 | +0.9 | |
1,040,429 | - | Shewana3_0893 | 0.44 | -0.4 | |
1,040,526 | + | Shewana3_0893 | 0.54 | -1.2 | |
1,040,749 | - | Shewana3_0893 | 0.78 | -0.0 |
Or see this region's nucleotide sequence