Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0872

Experiment: Rifampicin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0871 and Shewana3_0872 are separated by 41 nucleotidesShewana3_0872 and Shewana3_0873 are separated by 264 nucleotides Shewana3_0871: Shewana3_0871 - protoporphyrinogen oxidase (RefSeq), at 1,017,066 to 1,017,587 _0871 Shewana3_0872: Shewana3_0872 - hypothetical protein (RefSeq), at 1,017,629 to 1,018,156 _0872 Shewana3_0873: Shewana3_0873 - putative lipoprotein (RefSeq), at 1,018,421 to 1,019,428 _0873 Position (kb) 1017 1018 1019Strain fitness (log2 ratio) -2 -1 0 1 2at 1016.694 kb on + strandat 1016.956 kb on - strandat 1017.147 kb on + strand, within Shewana3_0871at 1017.157 kb on + strand, within Shewana3_0871at 1017.243 kb on + strand, within Shewana3_0871at 1017.250 kb on + strand, within Shewana3_0871at 1017.414 kb on - strand, within Shewana3_0871at 1017.714 kb on + strand, within Shewana3_0872at 1017.746 kb on - strand, within Shewana3_0872at 1017.746 kb on - strand, within Shewana3_0872at 1017.799 kb on - strand, within Shewana3_0872at 1017.916 kb on + strand, within Shewana3_0872at 1017.916 kb on + strand, within Shewana3_0872at 1017.955 kb on + strand, within Shewana3_0872at 1017.968 kb on - strand, within Shewana3_0872at 1018.001 kb on + strand, within Shewana3_0872at 1018.290 kb on + strandat 1018.298 kb on - strandat 1018.335 kb on + strandat 1018.490 kb on - strandat 1018.702 kb on + strand, within Shewana3_0873at 1019.004 kb on + strand, within Shewana3_0873at 1019.012 kb on - strand, within Shewana3_0873

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
remove
1,016,694 + -2.7
1,016,956 - -0.4
1,017,147 + Shewana3_0871 0.16 -0.3
1,017,157 + Shewana3_0871 0.17 -0.5
1,017,243 + Shewana3_0871 0.34 +1.2
1,017,250 + Shewana3_0871 0.35 -0.8
1,017,414 - Shewana3_0871 0.67 -1.2
1,017,714 + Shewana3_0872 0.16 +2.2
1,017,746 - Shewana3_0872 0.22 -0.4
1,017,746 - Shewana3_0872 0.22 -0.4
1,017,799 - Shewana3_0872 0.32 -0.5
1,017,916 + Shewana3_0872 0.54 -0.6
1,017,916 + Shewana3_0872 0.54 +2.0
1,017,955 + Shewana3_0872 0.62 +0.0
1,017,968 - Shewana3_0872 0.64 -0.4
1,018,001 + Shewana3_0872 0.70 +1.8
1,018,290 + -0.7
1,018,298 - -1.4
1,018,335 + +0.4
1,018,490 - -1.0
1,018,702 + Shewana3_0873 0.28 -0.4
1,019,004 + Shewana3_0873 0.58 +0.5
1,019,012 - Shewana3_0873 0.59 -0.0

Or see this region's nucleotide sequence