Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0845 and Shewana3_0846 are separated by 192 nucleotides Shewana3_0846 and Shewana3_0847 are separated by 621 nucleotides
Shewana3_0845: Shewana3_0845 - anaerobic nitric oxide reductase transcription regulator (RefSeq), at 978,827 to 980,383
_0845
Shewana3_0846: Shewana3_0846 - putative nitric oxide reductase (subunit B) transmembrane protein (RefSeq), at 980,576 to 982,861
_0846
Shewana3_0847: Shewana3_0847 - potassium/proton antiporter (RefSeq), at 983,483 to 985,207
_0847
Position (kb) 980
981
982
983 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 979.649 kb on + strand, within Shewana3_0845 at 979.649 kb on + strand, within Shewana3_0845 at 979.657 kb on - strand, within Shewana3_0845 at 979.907 kb on + strand, within Shewana3_0845 at 979.915 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.938 kb on - strand, within Shewana3_0845 at 979.985 kb on - strand, within Shewana3_0845 at 980.004 kb on + strand, within Shewana3_0845 at 980.199 kb on + strand, within Shewana3_0845 at 980.227 kb on + strand, within Shewana3_0845 at 980.242 kb on + strand at 980.273 kb on + strand at 980.454 kb on + strand at 980.476 kb on + strand at 980.512 kb on + strand at 980.535 kb on + strand at 980.626 kb on + strand at 980.660 kb on + strand at 980.660 kb on + strand at 980.699 kb on - strand at 980.751 kb on - strand at 980.819 kb on + strand, within Shewana3_0846 at 980.885 kb on + strand, within Shewana3_0846 at 980.931 kb on + strand, within Shewana3_0846 at 980.931 kb on - strand, within Shewana3_0846 at 980.946 kb on + strand, within Shewana3_0846 at 980.990 kb on + strand, within Shewana3_0846 at 980.990 kb on + strand, within Shewana3_0846 at 981.261 kb on - strand, within Shewana3_0846 at 981.292 kb on - strand, within Shewana3_0846 at 981.389 kb on + strand, within Shewana3_0846 at 981.404 kb on + strand, within Shewana3_0846 at 981.404 kb on - strand, within Shewana3_0846 at 981.456 kb on + strand, within Shewana3_0846 at 981.474 kb on + strand, within Shewana3_0846 at 981.691 kb on + strand, within Shewana3_0846 at 981.715 kb on + strand, within Shewana3_0846 at 981.719 kb on + strand, within Shewana3_0846 at 981.719 kb on + strand, within Shewana3_0846 at 981.822 kb on + strand, within Shewana3_0846 at 981.885 kb on - strand, within Shewana3_0846 at 982.068 kb on + strand, within Shewana3_0846 at 982.076 kb on - strand, within Shewana3_0846 at 982.076 kb on - strand, within Shewana3_0846 at 982.088 kb on - strand, within Shewana3_0846 at 982.224 kb on + strand, within Shewana3_0846 at 982.266 kb on + strand, within Shewana3_0846 at 982.289 kb on - strand, within Shewana3_0846 at 982.357 kb on + strand, within Shewana3_0846 at 982.357 kb on + strand, within Shewana3_0846 at 982.393 kb on + strand, within Shewana3_0846 at 982.422 kb on + strand, within Shewana3_0846 at 982.444 kb on - strand, within Shewana3_0846 at 982.478 kb on - strand, within Shewana3_0846 at 982.648 kb on - strand at 982.900 kb on - strand at 983.058 kb on - strand at 983.330 kb on + strand at 983.653 kb on + strand at 983.772 kb on + strand, within Shewana3_0847
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 979,649 + Shewana3_0845 0.53 +0.2 979,649 + Shewana3_0845 0.53 -0.2 979,657 - Shewana3_0845 0.53 +0.1 979,907 + Shewana3_0845 0.69 -2.2 979,915 - Shewana3_0845 0.70 +2.0 979,938 - Shewana3_0845 0.71 +0.2 979,938 - Shewana3_0845 0.71 -0.2 979,938 - Shewana3_0845 0.71 -3.0 979,938 - Shewana3_0845 0.71 -0.2 979,985 - Shewana3_0845 0.74 -1.2 980,004 + Shewana3_0845 0.76 +0.2 980,199 + Shewana3_0845 0.88 -0.8 980,227 + Shewana3_0845 0.90 +0.3 980,242 + +0.2 980,273 + -0.4 980,454 + -0.2 980,476 + +0.6 980,512 + -0.6 980,535 + +0.1 980,626 + -0.5 980,660 + -0.6 980,660 + -0.4 980,699 - +1.4 980,751 - +0.2 980,819 + Shewana3_0846 0.11 +0.6 980,885 + Shewana3_0846 0.14 -0.5 980,931 + Shewana3_0846 0.16 -0.7 980,931 - Shewana3_0846 0.16 -1.0 980,946 + Shewana3_0846 0.16 +0.4 980,990 + Shewana3_0846 0.18 -0.4 980,990 + Shewana3_0846 0.18 -1.4 981,261 - Shewana3_0846 0.30 -0.9 981,292 - Shewana3_0846 0.31 +0.9 981,389 + Shewana3_0846 0.36 -0.6 981,404 + Shewana3_0846 0.36 -0.8 981,404 - Shewana3_0846 0.36 -1.3 981,456 + Shewana3_0846 0.38 -0.2 981,474 + Shewana3_0846 0.39 -0.4 981,691 + Shewana3_0846 0.49 +0.9 981,715 + Shewana3_0846 0.50 -2.5 981,719 + Shewana3_0846 0.50 -1.6 981,719 + Shewana3_0846 0.50 +0.0 981,822 + Shewana3_0846 0.55 -0.2 981,885 - Shewana3_0846 0.57 -0.7 982,068 + Shewana3_0846 0.65 -0.5 982,076 - Shewana3_0846 0.66 -2.9 982,076 - Shewana3_0846 0.66 -0.9 982,088 - Shewana3_0846 0.66 -0.6 982,224 + Shewana3_0846 0.72 -0.8 982,266 + Shewana3_0846 0.74 -0.5 982,289 - Shewana3_0846 0.75 -0.3 982,357 + Shewana3_0846 0.78 +1.2 982,357 + Shewana3_0846 0.78 -2.8 982,393 + Shewana3_0846 0.79 -0.4 982,422 + Shewana3_0846 0.81 -0.5 982,444 - Shewana3_0846 0.82 -0.4 982,478 - Shewana3_0846 0.83 -0.4 982,648 - -0.4 982,900 - -0.4 983,058 - -0.0 983,330 + -0.7 983,653 + +0.3 983,772 + Shewana3_0847 0.17 +0.2
Or see this region's nucleotide sequence