Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0843 and Shewana3_0844 are separated by 96 nucleotides Shewana3_0844 and Shewana3_0845 are separated by 171 nucleotides
Shewana3_0843: Shewana3_0843 - hypothetical protein (RefSeq), at 976,817 to 977,644
_0843
Shewana3_0844: Shewana3_0844 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 977,741 to 978,655
_0844
Shewana3_0845: Shewana3_0845 - anaerobic nitric oxide reductase transcription regulator (RefSeq), at 978,827 to 980,383
_0845
Position (kb) 977
978
979 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 976.790 kb on + strand at 976.816 kb on - strand at 976.827 kb on - strand at 976.971 kb on + strand, within Shewana3_0843 at 977.001 kb on + strand, within Shewana3_0843 at 977.059 kb on + strand, within Shewana3_0843 at 977.059 kb on + strand, within Shewana3_0843 at 977.225 kb on + strand, within Shewana3_0843 at 977.330 kb on + strand, within Shewana3_0843 at 977.404 kb on - strand, within Shewana3_0843 at 977.518 kb on + strand, within Shewana3_0843 at 977.553 kb on + strand, within Shewana3_0843 at 977.731 kb on - strand at 977.774 kb on - strand at 977.808 kb on + strand at 977.857 kb on - strand, within Shewana3_0844 at 977.889 kb on - strand, within Shewana3_0844 at 977.906 kb on + strand, within Shewana3_0844 at 978.013 kb on - strand, within Shewana3_0844 at 978.038 kb on + strand, within Shewana3_0844 at 978.079 kb on - strand, within Shewana3_0844 at 978.090 kb on + strand, within Shewana3_0844 at 978.142 kb on - strand, within Shewana3_0844 at 978.241 kb on - strand, within Shewana3_0844 at 978.459 kb on - strand, within Shewana3_0844 at 978.517 kb on - strand, within Shewana3_0844 at 978.529 kb on - strand, within Shewana3_0844 at 978.529 kb on - strand, within Shewana3_0844 at 978.531 kb on + strand, within Shewana3_0844 at 978.539 kb on - strand, within Shewana3_0844 at 978.539 kb on - strand, within Shewana3_0844 at 978.604 kb on + strand at 978.719 kb on - strand at 978.744 kb on - strand at 978.954 kb on + strand at 979.147 kb on - strand, within Shewana3_0845 at 979.172 kb on + strand, within Shewana3_0845 at 979.180 kb on - strand, within Shewana3_0845 at 979.295 kb on - strand, within Shewana3_0845 at 979.297 kb on + strand, within Shewana3_0845 at 979.649 kb on + strand, within Shewana3_0845 at 979.649 kb on + strand, within Shewana3_0845
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 976,790 + -1.4 976,816 - -1.6 976,827 - -2.2 976,971 + Shewana3_0843 0.19 -0.7 977,001 + Shewana3_0843 0.22 -1.5 977,059 + Shewana3_0843 0.29 -1.1 977,059 + Shewana3_0843 0.29 -0.6 977,225 + Shewana3_0843 0.49 -0.7 977,330 + Shewana3_0843 0.62 -1.0 977,404 - Shewana3_0843 0.71 +0.4 977,518 + Shewana3_0843 0.85 -0.4 977,553 + Shewana3_0843 0.89 -0.0 977,731 - +0.5 977,774 - -2.9 977,808 + -0.9 977,857 - Shewana3_0844 0.13 -2.6 977,889 - Shewana3_0844 0.16 -2.5 977,906 + Shewana3_0844 0.18 -2.1 978,013 - Shewana3_0844 0.30 -1.7 978,038 + Shewana3_0844 0.32 -0.4 978,079 - Shewana3_0844 0.37 -2.1 978,090 + Shewana3_0844 0.38 +0.1 978,142 - Shewana3_0844 0.44 -2.0 978,241 - Shewana3_0844 0.55 -3.8 978,459 - Shewana3_0844 0.78 -1.9 978,517 - Shewana3_0844 0.85 -0.5 978,529 - Shewana3_0844 0.86 -2.4 978,529 - Shewana3_0844 0.86 -3.9 978,531 + Shewana3_0844 0.86 -2.0 978,539 - Shewana3_0844 0.87 -0.1 978,539 - Shewana3_0844 0.87 -1.3 978,604 + +0.9 978,719 - +1.2 978,744 - -0.1 978,954 + +0.2 979,147 - Shewana3_0845 0.21 -0.4 979,172 + Shewana3_0845 0.22 -1.3 979,180 - Shewana3_0845 0.23 -0.2 979,295 - Shewana3_0845 0.30 -0.1 979,297 + Shewana3_0845 0.30 -0.2 979,649 + Shewana3_0845 0.53 +0.2 979,649 + Shewana3_0845 0.53 -0.2
Or see this region's nucleotide sequence