Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0797 and Shewana3_0798 are separated by 208 nucleotides Shewana3_0798 and Shewana3_0799 are separated by 62 nucleotides Shewana3_0799 and Shewana3_0800 are separated by 187 nucleotides
Shewana3_0797: Shewana3_0797 - protease domain-containing protein (RefSeq), at 916,978 to 921,159
_0797
Shewana3_0798: Shewana3_0798 - DNA-binding transcriptional regulator AsnC (RefSeq), at 921,368 to 921,862
_0798
Shewana3_0799: Shewana3_0799 - ribosomal large subunit pseudouridine synthase A (RefSeq), at 921,925 to 922,602
_0799
Shewana3_0800: Shewana3_0800 - peptidase U32 (RefSeq), at 922,790 to 924,706
_0800
Position (kb) 921
922
923 Strain fitness (log2 ratio) -2
-1
0
1
2 at 921.089 kb on + strand at 921.089 kb on + strand at 921.097 kb on - strand at 921.488 kb on + strand, within Shewana3_0798 at 921.627 kb on + strand, within Shewana3_0798 at 921.773 kb on + strand, within Shewana3_0798 at 921.781 kb on - strand, within Shewana3_0798 at 921.928 kb on + strand at 921.984 kb on - strand at 922.008 kb on + strand, within Shewana3_0799 at 922.141 kb on - strand, within Shewana3_0799 at 922.153 kb on - strand, within Shewana3_0799 at 922.153 kb on - strand, within Shewana3_0799 at 922.182 kb on - strand, within Shewana3_0799 at 922.182 kb on - strand, within Shewana3_0799 at 922.182 kb on - strand, within Shewana3_0799 at 922.230 kb on + strand, within Shewana3_0799 at 922.471 kb on + strand, within Shewana3_0799 at 922.755 kb on - strand at 922.883 kb on + strand at 922.981 kb on + strand at 923.037 kb on - strand, within Shewana3_0800 at 923.119 kb on + strand, within Shewana3_0800 at 923.192 kb on - strand, within Shewana3_0800 at 923.443 kb on - strand, within Shewana3_0800 at 923.551 kb on - strand, within Shewana3_0800
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 921,089 + -0.3 921,089 + -0.1 921,097 - -0.4 921,488 + Shewana3_0798 0.24 -0.3 921,627 + Shewana3_0798 0.52 +1.4 921,773 + Shewana3_0798 0.82 -0.1 921,781 - Shewana3_0798 0.83 +0.3 921,928 + -1.0 921,984 - -0.9 922,008 + Shewana3_0799 0.12 +0.8 922,141 - Shewana3_0799 0.32 +0.2 922,153 - Shewana3_0799 0.34 -1.1 922,153 - Shewana3_0799 0.34 -1.1 922,182 - Shewana3_0799 0.38 -1.2 922,182 - Shewana3_0799 0.38 -0.4 922,182 - Shewana3_0799 0.38 -2.1 922,230 + Shewana3_0799 0.45 -1.0 922,471 + Shewana3_0799 0.81 -1.4 922,755 - -1.1 922,883 + +0.3 922,981 + +0.3 923,037 - Shewana3_0800 0.13 +0.9 923,119 + Shewana3_0800 0.17 +0.3 923,192 - Shewana3_0800 0.21 +0.4 923,443 - Shewana3_0800 0.34 +0.4 923,551 - Shewana3_0800 0.40 +1.8
Or see this region's nucleotide sequence