Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0792 and Shewana3_0793 are separated by 7 nucleotides Shewana3_0793 and Shewana3_0794 are separated by 250 nucleotides Shewana3_0794 and Shewana3_0795 overlap by 4 nucleotides Shewana3_0795 and Shewana3_0796 are separated by 143 nucleotides
Shewana3_0792: Shewana3_0792 - aromatic acid decarboxylase (RefSeq), at 913,115 to 913,774
_0792
Shewana3_0793: Shewana3_0793 - hypoxanthine phosphoribosyltransferase (RefSeq), at 913,782 to 914,312
_0793
Shewana3_0794: Shewana3_0794 - ABC transporter related (RefSeq), at 914,563 to 915,501
_0794
Shewana3_0795: Shewana3_0795 - ABC-2 type transporter (RefSeq), at 915,498 to 916,268
_0795
Shewana3_0796: Shewana3_0796 - hypothetical protein (RefSeq), at 916,412 to 916,915
_0796
Position (kb)
914
915
916 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 913.977 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793 at 914.474 kb on - strand at 914.561 kb on - strand at 914.711 kb on + strand, within Shewana3_0794 at 914.803 kb on - strand, within Shewana3_0794 at 914.812 kb on + strand, within Shewana3_0794 at 914.813 kb on - strand, within Shewana3_0794 at 915.344 kb on + strand, within Shewana3_0794 at 915.352 kb on - strand, within Shewana3_0794 at 915.352 kb on - strand, within Shewana3_0794 at 915.727 kb on - strand, within Shewana3_0795 at 915.853 kb on - strand, within Shewana3_0795 at 915.910 kb on + strand, within Shewana3_0795 at 915.951 kb on - strand, within Shewana3_0795 at 915.966 kb on - strand, within Shewana3_0795 at 915.966 kb on - strand, within Shewana3_0795 at 916.043 kb on - strand, within Shewana3_0795 at 916.043 kb on - strand, within Shewana3_0795 at 916.099 kb on + strand, within Shewana3_0795 at 916.133 kb on + strand, within Shewana3_0795 at 916.189 kb on + strand, within Shewana3_0795 at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.247 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.409 kb on + strand at 916.414 kb on + strand at 916.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 913,977 + Shewana3_0793 0.37 +0.7 913,995 + Shewana3_0793 0.40 +1.2 913,995 + Shewana3_0793 0.40 +0.5 914,474 - -0.5 914,561 - -1.4 914,711 + Shewana3_0794 0.16 -0.4 914,803 - Shewana3_0794 0.26 +0.7 914,812 + Shewana3_0794 0.27 -0.3 914,813 - Shewana3_0794 0.27 -0.4 915,344 + Shewana3_0794 0.83 -0.4 915,352 - Shewana3_0794 0.84 +0.9 915,352 - Shewana3_0794 0.84 +0.4 915,727 - Shewana3_0795 0.30 +1.9 915,853 - Shewana3_0795 0.46 -0.5 915,910 + Shewana3_0795 0.53 +0.3 915,951 - Shewana3_0795 0.59 -0.9 915,966 - Shewana3_0795 0.61 -1.4 915,966 - Shewana3_0795 0.61 -2.4 916,043 - Shewana3_0795 0.71 -0.9 916,043 - Shewana3_0795 0.71 -2.3 916,099 + Shewana3_0795 0.78 -0.2 916,133 + Shewana3_0795 0.82 +0.1 916,189 + Shewana3_0795 0.90 -0.7 916,222 - -0.9 916,222 - -0.1 916,222 - +0.4 916,222 - -0.1 916,222 - +1.9 916,247 + +6.5 916,249 + -0.1 916,249 + -1.2 916,249 + -0.5 916,249 + -0.3 916,249 + -0.3 916,257 - -1.5 916,257 - -0.2 916,257 - -0.9 916,257 - -0.9 916,409 + -0.1 916,414 + +0.4 916,414 + -0.0
Or see this region's nucleotide sequence