Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0791 and Shewana3_0792 are separated by 2 nucleotides Shewana3_0792 and Shewana3_0793 are separated by 7 nucleotides Shewana3_0793 and Shewana3_0794 are separated by 250 nucleotides
Shewana3_0791: Shewana3_0791 - UDP-N-acetylmuramate (RefSeq), at 911,715 to 913,112
_0791
Shewana3_0792: Shewana3_0792 - aromatic acid decarboxylase (RefSeq), at 913,115 to 913,774
_0792
Shewana3_0793: Shewana3_0793 - hypoxanthine phosphoribosyltransferase (RefSeq), at 913,782 to 914,312
_0793
Shewana3_0794: Shewana3_0794 - ABC transporter related (RefSeq), at 914,563 to 915,501
_0794
Position (kb) 913
914
915 Strain fitness (log2 ratio) -1
0
1 at 912.841 kb on + strand, within Shewana3_0791 at 912.949 kb on + strand, within Shewana3_0791 at 913.977 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793 at 913.995 kb on + strand, within Shewana3_0793 at 914.474 kb on - strand at 914.561 kb on - strand at 914.711 kb on + strand, within Shewana3_0794 at 914.803 kb on - strand, within Shewana3_0794 at 914.812 kb on + strand, within Shewana3_0794 at 914.813 kb on - strand, within Shewana3_0794
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 912,841 + Shewana3_0791 0.81 +0.6 912,949 + Shewana3_0791 0.88 +0.2 913,977 + Shewana3_0793 0.37 +0.7 913,995 + Shewana3_0793 0.40 +1.2 913,995 + Shewana3_0793 0.40 +0.5 914,474 - -0.5 914,561 - -1.4 914,711 + Shewana3_0794 0.16 -0.4 914,803 - Shewana3_0794 0.26 +0.7 914,812 + Shewana3_0794 0.27 -0.3 914,813 - Shewana3_0794 0.27 -0.4
Or see this region's nucleotide sequence