Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0780 and Shewana3_0781 overlap by 1 nucleotides Shewana3_0781 and Shewana3_0782 are separated by 162 nucleotides Shewana3_0782 and Shewana3_0783 are separated by 97 nucleotides
Shewana3_0780: Shewana3_0780 - 2-dehydropantoate 2-reductase (RefSeq), at 902,585 to 903,568
_0780
Shewana3_0781: Shewana3_0781 - VanZ family protein (RefSeq), at 903,568 to 903,930
_0781
Shewana3_0782: Shewana3_0782 - putative nucleotide-binding protein (RefSeq), at 904,093 to 904,578
_0782
Shewana3_0783: Shewana3_0783 - major facilitator transporter (RefSeq), at 904,676 to 906,067
_0783
Position (kb) 903
904 Strain fitness (log2 ratio) -1
0
1
2 at 902.712 kb on + strand, within Shewana3_0780 at 902.730 kb on - strand, within Shewana3_0780 at 902.788 kb on + strand, within Shewana3_0780 at 902.912 kb on - strand, within Shewana3_0780 at 902.970 kb on - strand, within Shewana3_0780 at 902.991 kb on + strand, within Shewana3_0780 at 902.993 kb on + strand, within Shewana3_0780 at 903.003 kb on + strand, within Shewana3_0780 at 903.003 kb on + strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.079 kb on - strand, within Shewana3_0780 at 903.144 kb on - strand, within Shewana3_0780 at 903.184 kb on - strand, within Shewana3_0780 at 903.537 kb on - strand at 903.620 kb on - strand, within Shewana3_0781 at 903.687 kb on - strand, within Shewana3_0781 at 903.818 kb on - strand, within Shewana3_0781 at 904.074 kb on + strand at 904.486 kb on + strand, within Shewana3_0782 at 904.542 kb on + strand at 904.593 kb on - strand at 904.616 kb on + strand at 904.632 kb on + strand at 904.698 kb on + strand at 904.801 kb on - strand at 904.854 kb on - strand, within Shewana3_0783
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 902,712 + Shewana3_0780 0.13 +0.1 902,730 - Shewana3_0780 0.15 +1.9 902,788 + Shewana3_0780 0.21 -0.4 902,912 - Shewana3_0780 0.33 +1.7 902,970 - Shewana3_0780 0.39 +0.4 902,991 + Shewana3_0780 0.41 +1.9 902,993 + Shewana3_0780 0.41 +0.8 903,003 + Shewana3_0780 0.42 +1.5 903,003 + Shewana3_0780 0.42 +0.9 903,011 - Shewana3_0780 0.43 +1.4 903,011 - Shewana3_0780 0.43 +1.2 903,011 - Shewana3_0780 0.43 +1.7 903,079 - Shewana3_0780 0.50 +0.5 903,144 - Shewana3_0780 0.57 +1.3 903,184 - Shewana3_0780 0.61 +1.3 903,537 - +1.7 903,620 - Shewana3_0781 0.14 +1.2 903,687 - Shewana3_0781 0.33 -0.0 903,818 - Shewana3_0781 0.69 -0.0 904,074 + -0.0 904,486 + Shewana3_0782 0.81 +0.4 904,542 + +0.4 904,593 - +0.4 904,616 + +0.1 904,632 + +0.5 904,698 + -0.8 904,801 - -0.5 904,854 - Shewana3_0783 0.13 -0.2
Or see this region's nucleotide sequence