Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0680

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0678 and Shewana3_0679 overlap by 4 nucleotidesShewana3_0679 and Shewana3_0680 are separated by 54 nucleotidesShewana3_0680 and Shewana3_0681 are separated by 11 nucleotidesShewana3_0681 and Shewana3_0682 are separated by 5 nucleotidesShewana3_0682 and Shewana3_0683 are separated by 16 nucleotides Shewana3_0678: Shewana3_0678 - ABC transporter related (RefSeq), at 797,459 to 798,277 _0678 Shewana3_0679: Shewana3_0679 - hypothetical protein (RefSeq), at 798,274 to 799,059 _0679 Shewana3_0680: Shewana3_0680 - hypothetical protein (RefSeq), at 799,114 to 799,587 _0680 Shewana3_0681: Shewana3_0681 - toluene tolerance family protein (RefSeq), at 799,599 to 800,252 _0681 Shewana3_0682: Shewana3_0682 - SpoIIAA family protein (RefSeq), at 800,258 to 800,542 _0682 Shewana3_0683: Shewana3_0683 - BolA family protein (RefSeq), at 800,559 to 800,810 _0683 Position (kb) 799 800Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 798.117 kb on + strand, within Shewana3_0678at 798.188 kb on + strand, within Shewana3_0678at 798.207 kb on + strandat 798.207 kb on + strandat 798.248 kb on + strandat 798.521 kb on + strand, within Shewana3_0679at 798.550 kb on + strand, within Shewana3_0679at 798.727 kb on + strand, within Shewana3_0679at 798.925 kb on + strand, within Shewana3_0679at 798.938 kb on + strand, within Shewana3_0679at 798.973 kb on + strand, within Shewana3_0679at 798.983 kb on + strandat 799.210 kb on + strand, within Shewana3_0680at 799.229 kb on + strand, within Shewana3_0680at 799.303 kb on + strand, within Shewana3_0680at 799.451 kb on + strand, within Shewana3_0680at 799.549 kb on + strandat 799.679 kb on + strand, within Shewana3_0681at 799.687 kb on + strand, within Shewana3_0681at 799.743 kb on + strand, within Shewana3_0681at 799.803 kb on + strand, within Shewana3_0681at 799.811 kb on + strand, within Shewana3_0681at 799.845 kb on + strand, within Shewana3_0681at 799.915 kb on + strand, within Shewana3_0681at 800.089 kb on + strand, within Shewana3_0681at 800.134 kb on + strand, within Shewana3_0681at 800.234 kb on + strandat 800.234 kb on + strandat 800.461 kb on + strand, within Shewana3_0682

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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798,117 + Shewana3_0678 0.80 -3.7
798,188 + Shewana3_0678 0.89 -4.0
798,207 + -3.1
798,207 + -2.7
798,248 + -1.9
798,521 + Shewana3_0679 0.31 -3.6
798,550 + Shewana3_0679 0.35 -2.7
798,727 + Shewana3_0679 0.58 -1.4
798,925 + Shewana3_0679 0.83 -1.4
798,938 + Shewana3_0679 0.84 -1.9
798,973 + Shewana3_0679 0.89 -3.7
798,983 + -1.7
799,210 + Shewana3_0680 0.20 -2.7
799,229 + Shewana3_0680 0.24 -3.0
799,303 + Shewana3_0680 0.40 -3.8
799,451 + Shewana3_0680 0.71 -2.7
799,549 + -4.7
799,679 + Shewana3_0681 0.12 -0.7
799,687 + Shewana3_0681 0.13 -3.1
799,743 + Shewana3_0681 0.22 -4.1
799,803 + Shewana3_0681 0.31 -2.4
799,811 + Shewana3_0681 0.32 -1.9
799,845 + Shewana3_0681 0.38 -5.5
799,915 + Shewana3_0681 0.48 -3.3
800,089 + Shewana3_0681 0.75 -1.4
800,134 + Shewana3_0681 0.82 -4.1
800,234 + -3.5
800,234 + -3.1
800,461 + Shewana3_0682 0.71 -4.3

Or see this region's nucleotide sequence