Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0677 and Shewana3_0678 are separated by 562 nucleotides Shewana3_0678 and Shewana3_0679 overlap by 4 nucleotides Shewana3_0679 and Shewana3_0680 are separated by 54 nucleotides
Shewana3_0677: Shewana3_0677 - KpsF/GutQ family protein (RefSeq), at 795,919 to 796,896
_0677
Shewana3_0678: Shewana3_0678 - ABC transporter related (RefSeq), at 797,459 to 798,277
_0678
Shewana3_0679: Shewana3_0679 - hypothetical protein (RefSeq), at 798,274 to 799,059
_0679
Shewana3_0680: Shewana3_0680 - hypothetical protein (RefSeq), at 799,114 to 799,587
_0680
Position (kb) 797
798
799 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 796.987 kb on - strand at 797.034 kb on - strand at 797.366 kb on - strand at 797.409 kb on + strand at 797.651 kb on + strand, within Shewana3_0678 at 797.664 kb on + strand, within Shewana3_0678 at 797.778 kb on + strand, within Shewana3_0678 at 798.117 kb on + strand, within Shewana3_0678 at 798.188 kb on + strand, within Shewana3_0678 at 798.207 kb on + strand at 798.207 kb on + strand at 798.248 kb on + strand at 798.521 kb on + strand, within Shewana3_0679 at 798.550 kb on + strand, within Shewana3_0679 at 798.727 kb on + strand, within Shewana3_0679 at 798.925 kb on + strand, within Shewana3_0679 at 798.938 kb on + strand, within Shewana3_0679 at 798.973 kb on + strand, within Shewana3_0679 at 798.983 kb on + strand at 799.210 kb on + strand, within Shewana3_0680 at 799.229 kb on + strand, within Shewana3_0680
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 796,987 - -0.5 797,034 - -0.7 797,366 - -1.9 797,409 + -0.7 797,651 + Shewana3_0678 0.23 -1.6 797,664 + Shewana3_0678 0.25 -1.8 797,778 + Shewana3_0678 0.39 -2.4 798,117 + Shewana3_0678 0.80 -3.7 798,188 + Shewana3_0678 0.89 -4.0 798,207 + -3.1 798,207 + -2.7 798,248 + -1.9 798,521 + Shewana3_0679 0.31 -3.6 798,550 + Shewana3_0679 0.35 -2.7 798,727 + Shewana3_0679 0.58 -1.4 798,925 + Shewana3_0679 0.83 -1.4 798,938 + Shewana3_0679 0.84 -1.9 798,973 + Shewana3_0679 0.89 -3.7 798,983 + -1.7 799,210 + Shewana3_0680 0.20 -2.7 799,229 + Shewana3_0680 0.24 -3.0
Or see this region's nucleotide sequence