Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0663 and Shewana3_0664 are separated by 725 nucleotides Shewana3_0664 and Shewana3_0665 are separated by 655 nucleotides
Shewana3_0663: Shewana3_0663 - protein of unknown function RIO1 (RefSeq), at 784,206 to 785,063
_0663
Shewana3_0664: Shewana3_0664 - transposase IS3/IS911 family protein (RefSeq), at 785,789 to 786,022
_0664
Shewana3_0665: Shewana3_0665 - OmpA/MotB domain-containing protein (RefSeq), at 786,678 to 787,370
_0665
Position (kb)
785
786
787 Strain fitness (log2 ratio)
-2
-1
0
1 at 784.855 kb on + strand, within Shewana3_0663 at 784.956 kb on + strand, within Shewana3_0663 at 785.162 kb on - strand at 785.255 kb on - strand at 785.343 kb on + strand at 785.343 kb on + strand at 785.351 kb on - strand at 785.401 kb on + strand at 785.623 kb on + strand at 785.638 kb on - strand at 785.721 kb on + strand at 785.742 kb on - strand at 785.787 kb on + strand at 785.801 kb on + strand at 785.821 kb on + strand, within Shewana3_0664 at 786.038 kb on + strand at 786.097 kb on + strand at 786.105 kb on - strand at 786.118 kb on + strand at 786.118 kb on + strand at 786.120 kb on - strand at 786.126 kb on - strand at 786.126 kb on - strand at 786.128 kb on - strand at 786.145 kb on - strand at 786.291 kb on - strand at 786.306 kb on - strand at 786.316 kb on - strand at 786.436 kb on - strand at 786.624 kb on + strand at 786.624 kb on + strand at 786.763 kb on + strand, within Shewana3_0665
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 784,855 + Shewana3_0663 0.76 +0.2 784,956 + Shewana3_0663 0.87 -0.1 785,162 - +0.4 785,255 - +1.3 785,343 + -0.2 785,343 + -1.7 785,351 - +0.1 785,401 + -0.7 785,623 + +0.3 785,638 - +0.1 785,721 + -1.1 785,742 - -0.2 785,787 + +0.2 785,801 + +0.1 785,821 + Shewana3_0664 0.14 -1.3 786,038 + -0.1 786,097 + -1.7 786,105 - +0.7 786,118 + -1.2 786,118 + -1.8 786,120 - -1.3 786,126 - +0.2 786,126 - -0.3 786,128 - -0.1 786,145 - +0.1 786,291 - -0.3 786,306 - +0.1 786,316 - -0.2 786,436 - -0.2 786,624 + -0.8 786,624 + +0.1 786,763 + Shewana3_0665 0.12 +0.2
Or see this region's nucleotide sequence