Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0638

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0636 and Shewana3_0637 overlap by 4 nucleotidesShewana3_0637 and Shewana3_0638 are separated by 224 nucleotidesShewana3_0638 and Shewana3_0639 overlap by 1 nucleotidesShewana3_0639 and Shewana3_0640 are separated by 42 nucleotides Shewana3_0636: Shewana3_0636 - ATPase domain-containing protein (RefSeq), at 749,138 to 751,126 _0636 Shewana3_0637: Shewana3_0637 - two component LuxR family transcriptional regulator (RefSeq), at 751,123 to 751,734 _0637 Shewana3_0638: Shewana3_0638 - smc-like chromosome partitioning protein (DUF3584) (from data), at 751,959 to 755,630 _0638 Shewana3_0639: Shewana3_0639 - predicted chromosome partitioning protein (with smc-like Shewana3_0638) (from data), at 755,630 to 756,295 _0639 Shewana3_0640: Shewana3_0640 - predicted chromosome partitioning protein (with smc-like Shewana3_0638) (from data), at 756,338 to 757,558 _0640 Position (kb) 751 752 753 754 755 756Strain fitness (log2 ratio) -2 -1 0 1 2at 750.988 kb on + strandat 750.990 kb on + strandat 751.128 kb on - strandat 751.263 kb on - strand, within Shewana3_0637at 751.324 kb on - strand, within Shewana3_0637at 751.338 kb on + strand, within Shewana3_0637at 751.559 kb on + strand, within Shewana3_0637at 751.567 kb on - strand, within Shewana3_0637at 751.586 kb on + strand, within Shewana3_0637at 751.805 kb on - strandat 751.878 kb on + strandat 751.894 kb on - strandat 751.988 kb on - strandat 752.330 kb on - strand, within Shewana3_0638at 752.436 kb on + strand, within Shewana3_0638at 752.495 kb on + strand, within Shewana3_0638at 752.495 kb on + strand, within Shewana3_0638at 752.495 kb on + strand, within Shewana3_0638at 752.495 kb on + strand, within Shewana3_0638at 752.503 kb on - strand, within Shewana3_0638at 752.503 kb on - strand, within Shewana3_0638at 752.503 kb on - strand, within Shewana3_0638at 752.647 kb on + strand, within Shewana3_0638at 752.747 kb on - strand, within Shewana3_0638at 752.774 kb on - strand, within Shewana3_0638at 752.777 kb on + strand, within Shewana3_0638at 752.910 kb on - strand, within Shewana3_0638at 753.259 kb on + strand, within Shewana3_0638at 753.266 kb on - strand, within Shewana3_0638at 753.463 kb on + strand, within Shewana3_0638at 753.506 kb on + strand, within Shewana3_0638at 753.519 kb on - strand, within Shewana3_0638at 753.519 kb on - strand, within Shewana3_0638at 753.519 kb on - strand, within Shewana3_0638at 753.578 kb on + strand, within Shewana3_0638at 753.580 kb on + strand, within Shewana3_0638at 753.588 kb on - strand, within Shewana3_0638at 753.620 kb on - strand, within Shewana3_0638at 753.620 kb on - strand, within Shewana3_0638at 753.708 kb on + strand, within Shewana3_0638at 753.830 kb on + strand, within Shewana3_0638at 753.872 kb on + strand, within Shewana3_0638at 753.938 kb on - strand, within Shewana3_0638at 753.963 kb on + strand, within Shewana3_0638at 753.976 kb on - strand, within Shewana3_0638at 754.011 kb on - strand, within Shewana3_0638at 754.036 kb on - strand, within Shewana3_0638at 754.161 kb on - strand, within Shewana3_0638at 754.210 kb on - strand, within Shewana3_0638at 754.210 kb on - strand, within Shewana3_0638at 754.286 kb on + strand, within Shewana3_0638at 754.337 kb on + strand, within Shewana3_0638at 754.387 kb on - strand, within Shewana3_0638at 754.457 kb on + strand, within Shewana3_0638at 754.507 kb on - strand, within Shewana3_0638at 754.519 kb on + strand, within Shewana3_0638at 754.519 kb on - strand, within Shewana3_0638at 754.628 kb on - strand, within Shewana3_0638at 754.696 kb on - strand, within Shewana3_0638at 754.754 kb on + strand, within Shewana3_0638at 754.807 kb on + strand, within Shewana3_0638at 754.950 kb on + strand, within Shewana3_0638at 755.027 kb on + strand, within Shewana3_0638at 755.097 kb on + strand, within Shewana3_0638at 755.199 kb on + strand, within Shewana3_0638at 755.199 kb on + strand, within Shewana3_0638at 755.199 kb on + strand, within Shewana3_0638at 755.207 kb on - strand, within Shewana3_0638at 755.309 kb on + strandat 755.425 kb on - strandat 755.513 kb on - strandat 755.578 kb on - strandat 755.642 kb on - strandat 755.695 kb on - strandat 755.784 kb on - strand, within Shewana3_0639at 755.935 kb on + strand, within Shewana3_0639at 756.164 kb on - strand, within Shewana3_0639at 756.164 kb on - strand, within Shewana3_0639at 756.242 kb on + strandat 756.442 kb on + strandat 756.515 kb on - strand, within Shewana3_0640at 756.553 kb on + strand, within Shewana3_0640at 756.558 kb on + strand, within Shewana3_0640

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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750,988 + +0.4
750,990 + -0.0
751,128 - +0.3
751,263 - Shewana3_0637 0.23 -0.0
751,324 - Shewana3_0637 0.33 -0.4
751,338 + Shewana3_0637 0.35 +0.0
751,559 + Shewana3_0637 0.71 -0.2
751,567 - Shewana3_0637 0.73 +0.2
751,586 + Shewana3_0637 0.76 +0.0
751,805 - -0.8
751,878 + +0.1
751,894 - -0.4
751,988 - -0.7
752,330 - Shewana3_0638 0.10 +0.9
752,436 + Shewana3_0638 0.13 +0.2
752,495 + Shewana3_0638 0.15 +0.5
752,495 + Shewana3_0638 0.15 +0.5
752,495 + Shewana3_0638 0.15 +0.5
752,495 + Shewana3_0638 0.15 +2.5
752,503 - Shewana3_0638 0.15 +0.6
752,503 - Shewana3_0638 0.15 -0.0
752,503 - Shewana3_0638 0.15 +0.2
752,647 + Shewana3_0638 0.19 -1.0
752,747 - Shewana3_0638 0.21 +0.4
752,774 - Shewana3_0638 0.22 -0.8
752,777 + Shewana3_0638 0.22 +2.0
752,910 - Shewana3_0638 0.26 +0.3
753,259 + Shewana3_0638 0.35 +2.3
753,266 - Shewana3_0638 0.36 +1.3
753,463 + Shewana3_0638 0.41 -2.3
753,506 + Shewana3_0638 0.42 -0.5
753,519 - Shewana3_0638 0.42 -0.9
753,519 - Shewana3_0638 0.42 -0.9
753,519 - Shewana3_0638 0.42 +0.3
753,578 + Shewana3_0638 0.44 +1.2
753,580 + Shewana3_0638 0.44 +0.3
753,588 - Shewana3_0638 0.44 +0.0
753,620 - Shewana3_0638 0.45 -0.4
753,620 - Shewana3_0638 0.45 -1.4
753,708 + Shewana3_0638 0.48 -0.4
753,830 + Shewana3_0638 0.51 +0.1
753,872 + Shewana3_0638 0.52 -0.9
753,938 - Shewana3_0638 0.54 -0.0
753,963 + Shewana3_0638 0.55 +0.7
753,976 - Shewana3_0638 0.55 -1.6
754,011 - Shewana3_0638 0.56 +1.2
754,036 - Shewana3_0638 0.57 +1.2
754,161 - Shewana3_0638 0.60 +0.7
754,210 - Shewana3_0638 0.61 +0.2
754,210 - Shewana3_0638 0.61 -0.3
754,286 + Shewana3_0638 0.63 +0.9
754,337 + Shewana3_0638 0.65 +0.8
754,387 - Shewana3_0638 0.66 -0.9
754,457 + Shewana3_0638 0.68 +0.4
754,507 - Shewana3_0638 0.69 +0.9
754,519 + Shewana3_0638 0.70 -0.0
754,519 - Shewana3_0638 0.70 -0.8
754,628 - Shewana3_0638 0.73 +0.2
754,696 - Shewana3_0638 0.75 -0.8
754,754 + Shewana3_0638 0.76 -0.2
754,807 + Shewana3_0638 0.78 +1.4
754,950 + Shewana3_0638 0.81 +1.2
755,027 + Shewana3_0638 0.84 +0.8
755,097 + Shewana3_0638 0.85 +1.1
755,199 + Shewana3_0638 0.88 +0.6
755,199 + Shewana3_0638 0.88 +1.0
755,199 + Shewana3_0638 0.88 +1.2
755,207 - Shewana3_0638 0.88 -1.2
755,309 + -0.4
755,425 - -0.7
755,513 - +0.3
755,578 - -2.7
755,642 - -1.1
755,695 - +1.5
755,784 - Shewana3_0639 0.23 +0.6
755,935 + Shewana3_0639 0.46 +0.4
756,164 - Shewana3_0639 0.80 +0.3
756,164 - Shewana3_0639 0.80 -0.4
756,242 + +0.2
756,442 + +0.1
756,515 - Shewana3_0640 0.14 -1.6
756,553 + Shewana3_0640 0.18 +1.1
756,558 + Shewana3_0640 0.18 +0.2

Or see this region's nucleotide sequence