Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0550 and Shewana3_0551 are separated by 6 nucleotides Shewana3_0551 and Shewana3_0552 are separated by 149 nucleotides Shewana3_0552 and Shewana3_0553 are separated by 272 nucleotides Shewana3_0553 and Shewana3_0554 are separated by 15 nucleotides
Shewana3_0550: Shewana3_0550 - hypothetical protein (RefSeq), at 644,599 to 645,108
_0550
Shewana3_0551: Shewana3_0551 - hypothetical protein (RefSeq), at 645,115 to 645,429
_0551
Shewana3_0552: Shewana3_0552 - hypothetical protein (RefSeq), at 645,579 to 645,887
_0552
Shewana3_0553: Shewana3_0553 - hypothetical protein (RefSeq), at 646,160 to 646,684
_0553
Shewana3_0554: Shewana3_0554 - diguanylate cyclase/phosphodiesterase (RefSeq), at 646,700 to 648,454
_0554
Position (kb) 645
646 Strain fitness (log2 ratio) -1
0
1
2 at 644.843 kb on + strand, within Shewana3_0550 at 644.898 kb on + strand, within Shewana3_0550 at 644.924 kb on + strand, within Shewana3_0550 at 645.151 kb on + strand, within Shewana3_0551 at 645.172 kb on + strand, within Shewana3_0551 at 645.239 kb on + strand, within Shewana3_0551 at 645.239 kb on + strand, within Shewana3_0551 at 645.314 kb on + strand, within Shewana3_0551 at 645.314 kb on + strand, within Shewana3_0551 at 645.322 kb on - strand, within Shewana3_0551 at 645.362 kb on - strand, within Shewana3_0551 at 645.362 kb on - strand, within Shewana3_0551 at 645.707 kb on + strand, within Shewana3_0552 at 645.707 kb on + strand, within Shewana3_0552 at 645.715 kb on - strand, within Shewana3_0552 at 646.198 kb on - strand at 646.203 kb on + strand at 646.508 kb on + strand, within Shewana3_0553
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 644,843 + Shewana3_0550 0.48 -0.3 644,898 + Shewana3_0550 0.59 -0.2 644,924 + Shewana3_0550 0.64 -0.4 645,151 + Shewana3_0551 0.11 -0.0 645,172 + Shewana3_0551 0.18 -1.3 645,239 + Shewana3_0551 0.39 -0.9 645,239 + Shewana3_0551 0.39 -0.5 645,314 + Shewana3_0551 0.63 -0.5 645,314 + Shewana3_0551 0.63 +2.1 645,322 - Shewana3_0551 0.66 +0.0 645,362 - Shewana3_0551 0.78 +0.3 645,362 - Shewana3_0551 0.78 -0.4 645,707 + Shewana3_0552 0.41 -0.8 645,707 + Shewana3_0552 0.41 +0.3 645,715 - Shewana3_0552 0.44 -1.5 646,198 - -0.5 646,203 + -0.1 646,508 + Shewana3_0553 0.66 +0.7
Or see this region's nucleotide sequence