Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0533 and Shewana3_0534 are separated by 65 nucleotides Shewana3_0534 and Shewana3_0535 are separated by 9 nucleotides
Shewana3_0533: Shewana3_0533 - bile acid:sodium symporter (RefSeq), at 626,796 to 627,815
_0533
Shewana3_0534: Shewana3_0534 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 627,881 to 628,894
_0534
Shewana3_0535: Shewana3_0535 - major facilitator transporter (RefSeq), at 628,904 to 630,172
_0535
Position (kb) 627
628
629 Strain fitness (log2 ratio) -2
-1
0
1 at 626.964 kb on - strand, within Shewana3_0533 at 627.226 kb on + strand, within Shewana3_0533 at 627.779 kb on - strand at 627.932 kb on - strand at 628.165 kb on - strand, within Shewana3_0534 at 628.172 kb on - strand, within Shewana3_0534 at 628.299 kb on - strand, within Shewana3_0534 at 628.407 kb on + strand, within Shewana3_0534 at 628.546 kb on + strand, within Shewana3_0534 at 628.552 kb on + strand, within Shewana3_0534 at 628.654 kb on - strand, within Shewana3_0534 at 628.724 kb on - strand, within Shewana3_0534 at 628.798 kb on + strand at 628.834 kb on - strand at 628.851 kb on - strand at 629.488 kb on + strand, within Shewana3_0535 at 629.644 kb on + strand, within Shewana3_0535 at 629.735 kb on + strand, within Shewana3_0535 at 629.742 kb on + strand, within Shewana3_0535 at 629.775 kb on - strand at 629.816 kb on + strand, within Shewana3_0535
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 626,964 - Shewana3_0533 0.16 -2.0 627,226 + Shewana3_0533 0.42 -0.3 627,779 - +0.1 627,932 - +0.9 628,165 - Shewana3_0534 0.28 -0.4 628,172 - Shewana3_0534 0.29 -1.7 628,299 - Shewana3_0534 0.41 -1.3 628,407 + Shewana3_0534 0.52 -0.4 628,546 + Shewana3_0534 0.66 +0.5 628,552 + Shewana3_0534 0.66 -0.3 628,654 - Shewana3_0534 0.76 -0.8 628,724 - Shewana3_0534 0.83 -0.7 628,798 + -0.2 628,834 - -0.7 628,851 - -0.5 629,488 + Shewana3_0535 0.46 -0.5 629,644 + Shewana3_0535 0.58 -0.2 629,735 + Shewana3_0535 0.65 -0.2 629,742 + Shewana3_0535 0.66 +0.2 629,775 - +0.9 629,816 + Shewana3_0535 0.72 -0.1
Or see this region's nucleotide sequence