Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0436 and Shewana3_0437 are separated by 75 nucleotides Shewana3_0437 and Shewana3_0438 are separated by 3 nucleotides Shewana3_0438 and Shewana3_0439 are separated by 157 nucleotides
Shewana3_0436: Shewana3_0436 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 507,146 to 509,716
_0436
Shewana3_0437: Shewana3_0437 - short chain dehydrogenase (RefSeq), at 509,792 to 510,595
_0437
Shewana3_0438: Shewana3_0438 - hypothetical protein (RefSeq), at 510,599 to 510,823
_0438
Shewana3_0439: Shewana3_0439 - hypothetical protein (RefSeq), at 510,981 to 514,202
_0439
Position (kb)
509
510
511 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 508.819 kb on - strand, within Shewana3_0436 at 508.842 kb on - strand, within Shewana3_0436 at 508.842 kb on - strand, within Shewana3_0436 at 508.847 kb on + strand, within Shewana3_0436 at 508.912 kb on - strand, within Shewana3_0436 at 509.101 kb on - strand, within Shewana3_0436 at 509.118 kb on + strand, within Shewana3_0436 at 509.118 kb on + strand, within Shewana3_0436 at 509.520 kb on - strand at 509.524 kb on + strand at 509.633 kb on + strand at 509.638 kb on + strand at 509.849 kb on - strand at 509.991 kb on - strand, within Shewana3_0437 at 510.005 kb on + strand, within Shewana3_0437 at 510.039 kb on + strand, within Shewana3_0437 at 510.167 kb on + strand, within Shewana3_0437 at 510.175 kb on - strand, within Shewana3_0437 at 510.185 kb on - strand, within Shewana3_0437 at 510.202 kb on - strand, within Shewana3_0437 at 510.234 kb on - strand, within Shewana3_0437 at 510.399 kb on - strand, within Shewana3_0437 at 510.637 kb on - strand, within Shewana3_0438 at 510.733 kb on - strand, within Shewana3_0438 at 510.793 kb on + strand, within Shewana3_0438 at 510.849 kb on + strand at 510.857 kb on - strand at 510.881 kb on - strand at 510.948 kb on + strand at 510.953 kb on + strand at 510.979 kb on + strand at 511.059 kb on + strand at 511.104 kb on - strand at 511.122 kb on - strand at 511.230 kb on - strand at 511.320 kb on + strand, within Shewana3_0439 at 511.376 kb on + strand, within Shewana3_0439
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 508,819 - Shewana3_0436 0.65 -1.7 508,842 - Shewana3_0436 0.66 -0.2 508,842 - Shewana3_0436 0.66 -0.4 508,847 + Shewana3_0436 0.66 +0.6 508,912 - Shewana3_0436 0.69 -2.2 509,101 - Shewana3_0436 0.76 +0.0 509,118 + Shewana3_0436 0.77 -0.3 509,118 + Shewana3_0436 0.77 -0.5 509,520 - -2.7 509,524 + -1.0 509,633 + +0.2 509,638 + -0.3 509,849 - +1.8 509,991 - Shewana3_0437 0.25 -1.9 510,005 + Shewana3_0437 0.26 -0.3 510,039 + Shewana3_0437 0.31 -0.2 510,167 + Shewana3_0437 0.47 -1.4 510,175 - Shewana3_0437 0.48 -0.1 510,185 - Shewana3_0437 0.49 -0.8 510,202 - Shewana3_0437 0.51 -0.3 510,234 - Shewana3_0437 0.55 -1.6 510,399 - Shewana3_0437 0.75 -0.0 510,637 - Shewana3_0438 0.17 -0.7 510,733 - Shewana3_0438 0.60 -0.3 510,793 + Shewana3_0438 0.86 -0.2 510,849 + -0.3 510,857 - -0.4 510,881 - +0.0 510,948 + -0.2 510,953 + +2.0 510,979 + -0.5 511,059 + +1.8 511,104 - +0.2 511,122 - +0.1 511,230 - +0.3 511,320 + Shewana3_0439 0.11 -1.9 511,376 + Shewana3_0439 0.12 +0.0
Or see this region's nucleotide sequence