Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0437

Experiment: Rifampicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0436 and Shewana3_0437 are separated by 75 nucleotidesShewana3_0437 and Shewana3_0438 are separated by 3 nucleotidesShewana3_0438 and Shewana3_0439 are separated by 157 nucleotides Shewana3_0436: Shewana3_0436 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 507,146 to 509,716 _0436 Shewana3_0437: Shewana3_0437 - short chain dehydrogenase (RefSeq), at 509,792 to 510,595 _0437 Shewana3_0438: Shewana3_0438 - hypothetical protein (RefSeq), at 510,599 to 510,823 _0438 Shewana3_0439: Shewana3_0439 - hypothetical protein (RefSeq), at 510,981 to 514,202 _0439 Position (kb) 509 510 511Strain fitness (log2 ratio) -2 -1 0 1 2at 508.819 kb on - strand, within Shewana3_0436at 508.842 kb on - strand, within Shewana3_0436at 508.842 kb on - strand, within Shewana3_0436at 508.847 kb on + strand, within Shewana3_0436at 508.912 kb on - strand, within Shewana3_0436at 509.101 kb on - strand, within Shewana3_0436at 509.118 kb on + strand, within Shewana3_0436at 509.118 kb on + strand, within Shewana3_0436at 509.520 kb on - strandat 509.524 kb on + strandat 509.633 kb on + strandat 509.638 kb on + strandat 509.849 kb on - strandat 509.991 kb on - strand, within Shewana3_0437at 510.005 kb on + strand, within Shewana3_0437at 510.039 kb on + strand, within Shewana3_0437at 510.167 kb on + strand, within Shewana3_0437at 510.175 kb on - strand, within Shewana3_0437at 510.185 kb on - strand, within Shewana3_0437at 510.202 kb on - strand, within Shewana3_0437at 510.234 kb on - strand, within Shewana3_0437at 510.399 kb on - strand, within Shewana3_0437at 510.637 kb on - strand, within Shewana3_0438at 510.733 kb on - strand, within Shewana3_0438at 510.793 kb on + strand, within Shewana3_0438at 510.849 kb on + strandat 510.857 kb on - strandat 510.881 kb on - strandat 510.948 kb on + strandat 510.953 kb on + strandat 510.979 kb on + strandat 511.059 kb on + strandat 511.104 kb on - strandat 511.122 kb on - strandat 511.230 kb on - strandat 511.320 kb on + strand, within Shewana3_0439at 511.376 kb on + strand, within Shewana3_0439

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Per-strain Table

Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml
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508,819 - Shewana3_0436 0.65 -1.7
508,842 - Shewana3_0436 0.66 -0.2
508,842 - Shewana3_0436 0.66 -0.4
508,847 + Shewana3_0436 0.66 +0.6
508,912 - Shewana3_0436 0.69 -2.2
509,101 - Shewana3_0436 0.76 +0.0
509,118 + Shewana3_0436 0.77 -0.3
509,118 + Shewana3_0436 0.77 -0.5
509,520 - -2.7
509,524 + -1.0
509,633 + +0.2
509,638 + -0.3
509,849 - +1.8
509,991 - Shewana3_0437 0.25 -1.9
510,005 + Shewana3_0437 0.26 -0.3
510,039 + Shewana3_0437 0.31 -0.2
510,167 + Shewana3_0437 0.47 -1.4
510,175 - Shewana3_0437 0.48 -0.1
510,185 - Shewana3_0437 0.49 -0.8
510,202 - Shewana3_0437 0.51 -0.3
510,234 - Shewana3_0437 0.55 -1.6
510,399 - Shewana3_0437 0.75 -0.0
510,637 - Shewana3_0438 0.17 -0.7
510,733 - Shewana3_0438 0.60 -0.3
510,793 + Shewana3_0438 0.86 -0.2
510,849 + -0.3
510,857 - -0.4
510,881 - +0.0
510,948 + -0.2
510,953 + +2.0
510,979 + -0.5
511,059 + +1.8
511,104 - +0.2
511,122 - +0.1
511,230 - +0.3
511,320 + Shewana3_0439 0.11 -1.9
511,376 + Shewana3_0439 0.12 +0.0

Or see this region's nucleotide sequence