Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0429 and Shewana3_0430 are separated by 230 nucleotides Shewana3_0430 and Shewana3_0431 are separated by 211 nucleotides
Shewana3_0429: Shewana3_0429 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 491,659 to 496,122
_0429
Shewana3_0430: Shewana3_0430 - patatin (RefSeq), at 496,353 to 498,572
_0430
Shewana3_0431: Shewana3_0431 - peptidase M13 (RefSeq), at 498,784 to 500,826
_0431
Position (kb) 496
497
498
499 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 495.371 kb on - strand, within Shewana3_0429 at 495.371 kb on - strand, within Shewana3_0429 at 495.385 kb on - strand, within Shewana3_0429 at 495.385 kb on - strand, within Shewana3_0429 at 495.386 kb on + strand, within Shewana3_0429 at 495.481 kb on + strand, within Shewana3_0429 at 495.489 kb on - strand, within Shewana3_0429 at 495.534 kb on + strand, within Shewana3_0429 at 495.608 kb on + strand, within Shewana3_0429 at 495.711 kb on - strand at 495.816 kb on + strand at 496.003 kb on - strand at 496.017 kb on - strand at 496.029 kb on + strand at 496.117 kb on + strand at 496.117 kb on - strand at 496.429 kb on - strand at 496.429 kb on - strand at 496.587 kb on + strand, within Shewana3_0430 at 496.824 kb on + strand, within Shewana3_0430 at 496.914 kb on + strand, within Shewana3_0430 at 496.933 kb on - strand, within Shewana3_0430 at 496.996 kb on - strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.073 kb on + strand, within Shewana3_0430 at 497.193 kb on + strand, within Shewana3_0430 at 497.203 kb on + strand, within Shewana3_0430 at 497.225 kb on - strand, within Shewana3_0430 at 497.338 kb on - strand, within Shewana3_0430 at 497.562 kb on + strand, within Shewana3_0430 at 497.570 kb on - strand, within Shewana3_0430 at 497.608 kb on + strand, within Shewana3_0430 at 497.627 kb on + strand, within Shewana3_0430 at 497.660 kb on + strand, within Shewana3_0430 at 497.661 kb on + strand, within Shewana3_0430 at 497.711 kb on + strand, within Shewana3_0430 at 497.834 kb on + strand, within Shewana3_0430 at 497.882 kb on + strand, within Shewana3_0430 at 497.890 kb on - strand, within Shewana3_0430 at 497.897 kb on - strand, within Shewana3_0430 at 497.903 kb on + strand, within Shewana3_0430 at 497.904 kb on + strand, within Shewana3_0430 at 498.001 kb on - strand, within Shewana3_0430 at 498.015 kb on + strand, within Shewana3_0430 at 498.015 kb on + strand, within Shewana3_0430 at 498.034 kb on + strand, within Shewana3_0430 at 498.134 kb on - strand, within Shewana3_0430 at 498.135 kb on + strand, within Shewana3_0430 at 498.135 kb on + strand, within Shewana3_0430 at 498.396 kb on + strand at 498.432 kb on + strand at 498.440 kb on - strand at 498.442 kb on + strand at 498.452 kb on + strand at 499.215 kb on - strand, within Shewana3_0431 at 499.308 kb on + strand, within Shewana3_0431 at 499.308 kb on + strand, within Shewana3_0431 at 499.310 kb on + strand, within Shewana3_0431 at 499.310 kb on + strand, within Shewana3_0431 at 499.318 kb on - strand, within Shewana3_0431 at 499.318 kb on - strand, within Shewana3_0431 at 499.324 kb on + strand, within Shewana3_0431 at 499.558 kb on - strand, within Shewana3_0431
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 495,371 - Shewana3_0429 0.83 +0.0 495,371 - Shewana3_0429 0.83 +0.2 495,385 - Shewana3_0429 0.83 +0.8 495,385 - Shewana3_0429 0.83 -0.8 495,386 + Shewana3_0429 0.83 +0.5 495,481 + Shewana3_0429 0.86 -0.8 495,489 - Shewana3_0429 0.86 -1.1 495,534 + Shewana3_0429 0.87 -1.3 495,608 + Shewana3_0429 0.88 +0.6 495,711 - +0.0 495,816 + +0.7 496,003 - -0.7 496,017 - -0.4 496,029 + +4.8 496,117 + -0.2 496,117 - -0.6 496,429 - -0.9 496,429 - -1.4 496,587 + Shewana3_0430 0.11 -0.9 496,824 + Shewana3_0430 0.21 -1.7 496,914 + Shewana3_0430 0.25 -0.6 496,933 - Shewana3_0430 0.26 -3.1 496,996 - Shewana3_0430 0.29 +0.2 497,006 + Shewana3_0430 0.29 -1.3 497,006 + Shewana3_0430 0.29 -1.9 497,006 + Shewana3_0430 0.29 -1.2 497,073 + Shewana3_0430 0.32 -1.0 497,193 + Shewana3_0430 0.38 -1.1 497,203 + Shewana3_0430 0.38 -1.1 497,225 - Shewana3_0430 0.39 +0.1 497,338 - Shewana3_0430 0.44 -2.0 497,562 + Shewana3_0430 0.54 -2.1 497,570 - Shewana3_0430 0.55 -2.2 497,608 + Shewana3_0430 0.57 -0.7 497,627 + Shewana3_0430 0.57 -1.2 497,660 + Shewana3_0430 0.59 -1.7 497,661 + Shewana3_0430 0.59 -1.4 497,711 + Shewana3_0430 0.61 -1.2 497,834 + Shewana3_0430 0.67 -3.1 497,882 + Shewana3_0430 0.69 -0.8 497,890 - Shewana3_0430 0.69 -2.0 497,897 - Shewana3_0430 0.70 -1.7 497,903 + Shewana3_0430 0.70 -1.3 497,904 + Shewana3_0430 0.70 -1.4 498,001 - Shewana3_0430 0.74 -0.9 498,015 + Shewana3_0430 0.75 -1.4 498,015 + Shewana3_0430 0.75 -2.8 498,034 + Shewana3_0430 0.76 -1.2 498,134 - Shewana3_0430 0.80 -3.2 498,135 + Shewana3_0430 0.80 -0.8 498,135 + Shewana3_0430 0.80 -1.1 498,396 + -0.9 498,432 + -1.5 498,440 - +1.0 498,442 + -1.5 498,452 + -1.1 499,215 - Shewana3_0431 0.21 +1.5 499,308 + Shewana3_0431 0.26 +0.3 499,308 + Shewana3_0431 0.26 +2.2 499,310 + Shewana3_0431 0.26 +0.1 499,310 + Shewana3_0431 0.26 -0.7 499,318 - Shewana3_0431 0.26 -1.6 499,318 - Shewana3_0431 0.26 +0.0 499,324 + Shewana3_0431 0.26 +0.3 499,558 - Shewana3_0431 0.38 -1.0
Or see this region's nucleotide sequence