Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0348 and Shewana3_0349 are separated by 387 nucleotides Shewana3_0349 and Shewana3_0350 are separated by 16 nucleotides
Shewana3_0348: Shewana3_0348 - ATP-dependent DNA helicase RecG (RefSeq), at 380,774 to 382,864
_0348
Shewana3_0349: Shewana3_0349 - periplasmic sugar-binding protein, putative (RefSeq), at 383,252 to 384,298
_0349
Shewana3_0350: Shewana3_0350 - diguanylate cyclase (RefSeq), at 384,315 to 386,132
_0350
Position (kb) 383
384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 382.305 kb on + strand, within Shewana3_0348 at 382.360 kb on + strand, within Shewana3_0348 at 382.360 kb on + strand, within Shewana3_0348 at 382.360 kb on + strand, within Shewana3_0348 at 382.368 kb on - strand, within Shewana3_0348 at 382.368 kb on - strand, within Shewana3_0348 at 382.547 kb on - strand, within Shewana3_0348 at 382.547 kb on - strand, within Shewana3_0348 at 382.547 kb on - strand, within Shewana3_0348 at 382.578 kb on - strand, within Shewana3_0348 at 382.579 kb on - strand, within Shewana3_0348 at 382.590 kb on + strand, within Shewana3_0348 at 382.590 kb on + strand, within Shewana3_0348 at 382.613 kb on - strand, within Shewana3_0348 at 382.613 kb on - strand, within Shewana3_0348 at 382.645 kb on - strand, within Shewana3_0348 at 382.678 kb on - strand at 382.722 kb on + strand at 382.727 kb on + strand at 382.735 kb on - strand at 382.735 kb on - strand at 382.751 kb on + strand at 382.751 kb on + strand at 382.868 kb on + strand at 382.893 kb on + strand at 382.901 kb on + strand at 382.901 kb on + strand at 382.901 kb on - strand at 382.901 kb on - strand at 382.903 kb on - strand at 382.903 kb on - strand at 382.903 kb on - strand at 382.916 kb on + strand at 382.919 kb on - strand at 382.921 kb on + strand at 382.940 kb on + strand at 382.940 kb on + strand at 382.947 kb on - strand at 382.947 kb on - strand at 382.949 kb on + strand at 382.995 kb on - strand at 382.998 kb on + strand at 383.115 kb on + strand at 383.115 kb on + strand at 383.196 kb on + strand at 383.196 kb on + strand at 383.196 kb on + strand at 383.204 kb on - strand at 383.204 kb on - strand at 383.204 kb on - strand at 383.220 kb on + strand at 383.239 kb on + strand at 383.239 kb on + strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.263 kb on + strand at 383.263 kb on + strand at 383.271 kb on - strand at 383.271 kb on - strand at 383.284 kb on + strand at 383.335 kb on + strand at 383.383 kb on + strand, within Shewana3_0349 at 383.383 kb on + strand, within Shewana3_0349 at 383.391 kb on - strand, within Shewana3_0349 at 383.406 kb on - strand, within Shewana3_0349 at 383.580 kb on + strand, within Shewana3_0349 at 383.587 kb on - strand, within Shewana3_0349 at 383.587 kb on - strand, within Shewana3_0349 at 383.605 kb on + strand, within Shewana3_0349 at 383.701 kb on - strand, within Shewana3_0349 at 383.741 kb on + strand, within Shewana3_0349 at 383.749 kb on - strand, within Shewana3_0349 at 383.788 kb on + strand, within Shewana3_0349 at 383.796 kb on - strand, within Shewana3_0349 at 383.799 kb on + strand, within Shewana3_0349 at 383.807 kb on - strand, within Shewana3_0349 at 383.807 kb on - strand, within Shewana3_0349 at 383.844 kb on + strand, within Shewana3_0349 at 383.955 kb on - strand, within Shewana3_0349 at 383.991 kb on - strand, within Shewana3_0349 at 384.102 kb on - strand, within Shewana3_0349 at 384.169 kb on - strand, within Shewana3_0349 at 384.239 kb on - strand at 384.252 kb on - strand at 384.400 kb on - strand at 384.435 kb on + strand at 384.447 kb on + strand at 384.487 kb on + strand at 384.614 kb on + strand, within Shewana3_0350 at 384.614 kb on + strand, within Shewana3_0350 at 384.614 kb on + strand, within Shewana3_0350 at 384.614 kb on + strand, within Shewana3_0350 at 384.614 kb on + strand, within Shewana3_0350 at 384.622 kb on - strand, within Shewana3_0350 at 384.622 kb on - strand, within Shewana3_0350 at 384.622 kb on - strand, within Shewana3_0350 at 384.689 kb on + strand, within Shewana3_0350 at 384.694 kb on + strand, within Shewana3_0350 at 384.694 kb on + strand, within Shewana3_0350 at 384.694 kb on + strand, within Shewana3_0350 at 384.709 kb on + strand, within Shewana3_0350 at 384.717 kb on - strand, within Shewana3_0350 at 384.717 kb on - strand, within Shewana3_0350 at 384.717 kb on - strand, within Shewana3_0350 at 384.794 kb on + strand, within Shewana3_0350 at 384.901 kb on + strand, within Shewana3_0350 at 384.971 kb on + strand, within Shewana3_0350 at 384.983 kb on - strand, within Shewana3_0350 at 385.088 kb on + strand, within Shewana3_0350 at 385.095 kb on + strand, within Shewana3_0350 at 385.209 kb on - strand, within Shewana3_0350
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 382,305 + Shewana3_0348 0.73 -0.6 382,360 + Shewana3_0348 0.76 -0.6 382,360 + Shewana3_0348 0.76 -1.2 382,360 + Shewana3_0348 0.76 -1.9 382,368 - Shewana3_0348 0.76 -2.0 382,368 - Shewana3_0348 0.76 -0.3 382,547 - Shewana3_0348 0.85 -1.4 382,547 - Shewana3_0348 0.85 -0.9 382,547 - Shewana3_0348 0.85 -1.2 382,578 - Shewana3_0348 0.86 -0.9 382,579 - Shewana3_0348 0.86 +0.4 382,590 + Shewana3_0348 0.87 -1.6 382,590 + Shewana3_0348 0.87 +0.3 382,613 - Shewana3_0348 0.88 -0.2 382,613 - Shewana3_0348 0.88 -0.8 382,645 - Shewana3_0348 0.89 -1.1 382,678 - +0.5 382,722 + -1.0 382,727 + -1.5 382,735 - -1.8 382,735 - +1.4 382,751 + -2.5 382,751 + +0.9 382,868 + -1.7 382,893 + +0.2 382,901 + -0.8 382,901 + -2.4 382,901 - +0.1 382,901 - -0.5 382,903 - -0.1 382,903 - -0.2 382,903 - -0.6 382,916 + +0.7 382,919 - -2.1 382,921 + -0.9 382,940 + -1.0 382,940 + +0.6 382,947 - -0.7 382,947 - +0.4 382,949 + -0.4 382,995 - +0.3 382,998 + -1.5 383,115 + -1.8 383,115 + -0.6 383,196 + +0.0 383,196 + -0.9 383,196 + -0.4 383,204 - -1.0 383,204 - +0.8 383,204 - -3.1 383,220 + +0.6 383,239 + -0.4 383,239 + -1.3 383,242 - -1.2 383,242 - +0.2 383,242 - -1.4 383,242 - -0.8 383,242 - -1.9 383,263 + -1.0 383,263 + -1.3 383,271 - +1.7 383,271 - -0.2 383,284 + +0.1 383,335 + -0.9 383,383 + Shewana3_0349 0.13 -2.0 383,383 + Shewana3_0349 0.13 +0.6 383,391 - Shewana3_0349 0.13 +0.8 383,406 - Shewana3_0349 0.15 -3.6 383,580 + Shewana3_0349 0.31 -0.6 383,587 - Shewana3_0349 0.32 +1.4 383,587 - Shewana3_0349 0.32 -1.5 383,605 + Shewana3_0349 0.34 -0.1 383,701 - Shewana3_0349 0.43 -0.4 383,741 + Shewana3_0349 0.47 -0.5 383,749 - Shewana3_0349 0.47 -0.1 383,788 + Shewana3_0349 0.51 +0.2 383,796 - Shewana3_0349 0.52 -0.7 383,799 + Shewana3_0349 0.52 -0.1 383,807 - Shewana3_0349 0.53 -0.9 383,807 - Shewana3_0349 0.53 +0.2 383,844 + Shewana3_0349 0.57 +0.1 383,955 - Shewana3_0349 0.67 -0.3 383,991 - Shewana3_0349 0.71 -1.4 384,102 - Shewana3_0349 0.81 -1.8 384,169 - Shewana3_0349 0.88 -2.1 384,239 - +0.2 384,252 - -2.2 384,400 - -0.5 384,435 + -0.1 384,447 + +0.1 384,487 + +0.2 384,614 + Shewana3_0350 0.16 -1.1 384,614 + Shewana3_0350 0.16 +0.3 384,614 + Shewana3_0350 0.16 +0.2 384,614 + Shewana3_0350 0.16 +0.1 384,614 + Shewana3_0350 0.16 -0.3 384,622 - Shewana3_0350 0.17 -1.3 384,622 - Shewana3_0350 0.17 -1.5 384,622 - Shewana3_0350 0.17 -0.5 384,689 + Shewana3_0350 0.21 -0.4 384,694 + Shewana3_0350 0.21 +0.7 384,694 + Shewana3_0350 0.21 +1.1 384,694 + Shewana3_0350 0.21 -0.3 384,709 + Shewana3_0350 0.22 -2.1 384,717 - Shewana3_0350 0.22 -1.1 384,717 - Shewana3_0350 0.22 -0.7 384,717 - Shewana3_0350 0.22 -1.5 384,794 + Shewana3_0350 0.26 +2.0 384,901 + Shewana3_0350 0.32 +0.1 384,971 + Shewana3_0350 0.36 -0.6 384,983 - Shewana3_0350 0.37 +0.1 385,088 + Shewana3_0350 0.43 +0.1 385,095 + Shewana3_0350 0.43 +0.1 385,209 - Shewana3_0350 0.49 +0.1
Or see this region's nucleotide sequence