Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0331 and Shewana3_0332 are separated by 0 nucleotides Shewana3_0332 and Shewana3_0333 are separated by 9 nucleotides Shewana3_0333 and Shewana3_0334 overlap by 4 nucleotides
Shewana3_0331: Shewana3_0331 - monooxygenase, FAD-binding (RefSeq), at 365,164 to 366,471
_0331
Shewana3_0332: Shewana3_0332 - hypothetical protein (RefSeq), at 366,472 to 368,991
_0332
Shewana3_0333: Shewana3_0333 - hypothetical protein (RefSeq), at 369,001 to 369,843
_0333
Shewana3_0334: Shewana3_0334 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 369,840 to 370,274
_0334
Position (kb) 366
367
368
369 Strain fitness (log2 ratio) -1
0
1
2 at 365.611 kb on + strand, within Shewana3_0331 at 365.629 kb on + strand, within Shewana3_0331 at 365.645 kb on + strand, within Shewana3_0331 at 365.663 kb on - strand, within Shewana3_0331 at 365.799 kb on - strand, within Shewana3_0331 at 365.814 kb on + strand, within Shewana3_0331 at 365.878 kb on + strand, within Shewana3_0331 at 366.017 kb on + strand, within Shewana3_0331 at 366.017 kb on + strand, within Shewana3_0331 at 366.025 kb on - strand, within Shewana3_0331 at 366.150 kb on + strand, within Shewana3_0331 at 366.193 kb on - strand, within Shewana3_0331 at 366.449 kb on - strand at 366.561 kb on + strand at 366.612 kb on + strand at 366.627 kb on + strand at 366.628 kb on + strand at 366.656 kb on + strand at 366.666 kb on - strand at 366.769 kb on + strand, within Shewana3_0332 at 366.769 kb on + strand, within Shewana3_0332 at 366.808 kb on + strand, within Shewana3_0332 at 366.808 kb on + strand, within Shewana3_0332 at 366.813 kb on - strand, within Shewana3_0332 at 366.846 kb on - strand, within Shewana3_0332 at 366.927 kb on + strand, within Shewana3_0332 at 366.957 kb on - strand, within Shewana3_0332 at 367.029 kb on - strand, within Shewana3_0332 at 367.044 kb on + strand, within Shewana3_0332 at 367.049 kb on - strand, within Shewana3_0332 at 367.049 kb on - strand, within Shewana3_0332 at 367.049 kb on - strand, within Shewana3_0332 at 367.142 kb on - strand, within Shewana3_0332 at 367.207 kb on - strand, within Shewana3_0332 at 367.239 kb on + strand, within Shewana3_0332 at 367.246 kb on + strand, within Shewana3_0332 at 367.402 kb on + strand, within Shewana3_0332 at 367.531 kb on - strand, within Shewana3_0332 at 367.531 kb on - strand, within Shewana3_0332 at 367.537 kb on + strand, within Shewana3_0332 at 367.684 kb on - strand, within Shewana3_0332 at 367.821 kb on + strand, within Shewana3_0332 at 367.843 kb on + strand, within Shewana3_0332 at 367.851 kb on - strand, within Shewana3_0332 at 367.875 kb on - strand, within Shewana3_0332 at 367.912 kb on + strand, within Shewana3_0332 at 367.997 kb on - strand, within Shewana3_0332 at 368.139 kb on - strand, within Shewana3_0332 at 368.192 kb on + strand, within Shewana3_0332 at 368.192 kb on + strand, within Shewana3_0332 at 368.200 kb on - strand, within Shewana3_0332 at 368.361 kb on - strand, within Shewana3_0332 at 368.414 kb on + strand, within Shewana3_0332 at 368.433 kb on + strand, within Shewana3_0332 at 368.487 kb on - strand, within Shewana3_0332 at 368.570 kb on + strand, within Shewana3_0332 at 368.595 kb on + strand, within Shewana3_0332 at 368.684 kb on + strand, within Shewana3_0332 at 368.737 kb on - strand, within Shewana3_0332 at 368.817 kb on + strand at 368.893 kb on - strand at 369.085 kb on - strand at 369.140 kb on - strand, within Shewana3_0333 at 369.142 kb on + strand, within Shewana3_0333 at 369.147 kb on + strand, within Shewana3_0333 at 369.147 kb on + strand, within Shewana3_0333 at 369.150 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.288 kb on - strand, within Shewana3_0333 at 369.381 kb on - strand, within Shewana3_0333 at 369.502 kb on - strand, within Shewana3_0333 at 369.561 kb on - strand, within Shewana3_0333 at 369.573 kb on + strand, within Shewana3_0333 at 369.693 kb on - strand, within Shewana3_0333 at 369.693 kb on - strand, within Shewana3_0333 at 369.752 kb on - strand, within Shewana3_0333 at 369.757 kb on + strand, within Shewana3_0333 at 369.765 kb on + strand at 369.765 kb on + strand at 369.951 kb on + strand, within Shewana3_0334 at 369.954 kb on - strand, within Shewana3_0334 at 369.954 kb on - strand, within Shewana3_0334 at 369.960 kb on - strand, within Shewana3_0334
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 365,611 + Shewana3_0331 0.34 -0.5 365,629 + Shewana3_0331 0.36 +1.2 365,645 + Shewana3_0331 0.37 -0.0 365,663 - Shewana3_0331 0.38 -0.4 365,799 - Shewana3_0331 0.49 -0.1 365,814 + Shewana3_0331 0.50 -0.2 365,878 + Shewana3_0331 0.55 +1.1 366,017 + Shewana3_0331 0.65 +1.4 366,017 + Shewana3_0331 0.65 -0.3 366,025 - Shewana3_0331 0.66 -0.2 366,150 + Shewana3_0331 0.75 +0.0 366,193 - Shewana3_0331 0.79 +2.1 366,449 - -1.0 366,561 + +0.4 366,612 + +0.1 366,627 + -0.8 366,628 + -0.4 366,656 + -1.0 366,666 - +0.1 366,769 + Shewana3_0332 0.12 +0.5 366,769 + Shewana3_0332 0.12 +0.1 366,808 + Shewana3_0332 0.13 +1.1 366,808 + Shewana3_0332 0.13 -0.1 366,813 - Shewana3_0332 0.14 -0.4 366,846 - Shewana3_0332 0.15 +0.4 366,927 + Shewana3_0332 0.18 -0.1 366,957 - Shewana3_0332 0.19 -0.1 367,029 - Shewana3_0332 0.22 -1.2 367,044 + Shewana3_0332 0.23 +0.1 367,049 - Shewana3_0332 0.23 -0.0 367,049 - Shewana3_0332 0.23 +0.9 367,049 - Shewana3_0332 0.23 +0.2 367,142 - Shewana3_0332 0.27 -0.2 367,207 - Shewana3_0332 0.29 -0.4 367,239 + Shewana3_0332 0.30 -0.2 367,246 + Shewana3_0332 0.31 +0.1 367,402 + Shewana3_0332 0.37 -0.5 367,531 - Shewana3_0332 0.42 -0.9 367,531 - Shewana3_0332 0.42 -0.8 367,537 + Shewana3_0332 0.42 -0.4 367,684 - Shewana3_0332 0.48 -0.2 367,821 + Shewana3_0332 0.54 -0.2 367,843 + Shewana3_0332 0.54 -0.3 367,851 - Shewana3_0332 0.55 -0.1 367,875 - Shewana3_0332 0.56 -0.9 367,912 + Shewana3_0332 0.57 -0.8 367,997 - Shewana3_0332 0.61 +0.4 368,139 - Shewana3_0332 0.66 -0.4 368,192 + Shewana3_0332 0.68 +0.2 368,192 + Shewana3_0332 0.68 +0.1 368,200 - Shewana3_0332 0.69 -0.2 368,361 - Shewana3_0332 0.75 +0.6 368,414 + Shewana3_0332 0.77 +0.1 368,433 + Shewana3_0332 0.78 +0.1 368,487 - Shewana3_0332 0.80 -0.2 368,570 + Shewana3_0332 0.83 +0.7 368,595 + Shewana3_0332 0.84 -0.1 368,684 + Shewana3_0332 0.88 +0.2 368,737 - Shewana3_0332 0.90 -0.6 368,817 + -0.1 368,893 - -0.1 369,085 - -0.1 369,140 - Shewana3_0333 0.16 -0.1 369,142 + Shewana3_0333 0.17 -0.1 369,147 + Shewana3_0333 0.17 -0.7 369,147 + Shewana3_0333 0.17 -0.2 369,150 - Shewana3_0333 0.18 +0.1 369,155 - Shewana3_0333 0.18 -0.7 369,155 - Shewana3_0333 0.18 +0.0 369,155 - Shewana3_0333 0.18 -0.5 369,155 - Shewana3_0333 0.18 -0.2 369,288 - Shewana3_0333 0.34 -0.6 369,381 - Shewana3_0333 0.45 +0.3 369,502 - Shewana3_0333 0.59 +0.2 369,561 - Shewana3_0333 0.66 -0.8 369,573 + Shewana3_0333 0.68 +0.5 369,693 - Shewana3_0333 0.82 -1.2 369,693 - Shewana3_0333 0.82 -1.0 369,752 - Shewana3_0333 0.89 -0.4 369,757 + Shewana3_0333 0.90 -1.6 369,765 + -0.4 369,765 + -1.2 369,951 + Shewana3_0334 0.26 -1.0 369,954 - Shewana3_0334 0.26 -0.6 369,954 - Shewana3_0334 0.26 -0.2 369,960 - Shewana3_0334 0.28 -0.7
Or see this region's nucleotide sequence