Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0312 and Shewana3_0313 overlap by 4 nucleotides Shewana3_0313 and Shewana3_0314 are separated by 15 nucleotides Shewana3_0314 and Shewana3_0315 are separated by 39 nucleotides Shewana3_0315 and Shewana3_0316 are separated by 133 nucleotides
Shewana3_0312: Shewana3_0312 - prolyl aminopeptidase (RefSeq), at 350,384 to 351,289
_0312
Shewana3_0313: Shewana3_0313 - hypothetical protein (RefSeq), at 351,286 to 351,888
_0313
Shewana3_0314: Shewana3_0314 - D-tyrosyl-tRNA(Tyr) deacylase (RefSeq), at 351,904 to 352,341
_0314
Shewana3_0315: Shewana3_0315 - thioesterase domain-containing protein (RefSeq), at 352,381 to 352,818
_0315
Shewana3_0316: Shewana3_0316 - azoreductase (RefSeq), at 352,952 to 353,548
_0316
Position (kb) 351
352
353 Strain fitness (log2 ratio) -2
-1
0
1 at 350.933 kb on + strand, within Shewana3_0312 at 350.983 kb on + strand, within Shewana3_0312 at 351.436 kb on + strand, within Shewana3_0313 at 351.482 kb on - strand, within Shewana3_0313 at 351.529 kb on - strand, within Shewana3_0313 at 351.575 kb on - strand, within Shewana3_0313 at 351.787 kb on - strand, within Shewana3_0313 at 351.844 kb on - strand at 352.055 kb on + strand, within Shewana3_0314 at 352.191 kb on + strand, within Shewana3_0314 at 352.380 kb on - strand at 352.413 kb on - strand at 352.447 kb on - strand, within Shewana3_0315 at 352.526 kb on - strand, within Shewana3_0315 at 352.621 kb on + strand, within Shewana3_0315 at 352.629 kb on - strand, within Shewana3_0315 at 352.654 kb on + strand, within Shewana3_0315 at 352.654 kb on + strand, within Shewana3_0315 at 352.662 kb on - strand, within Shewana3_0315 at 352.662 kb on - strand, within Shewana3_0315 at 352.765 kb on + strand, within Shewana3_0315 at 352.800 kb on - strand at 352.909 kb on - strand at 353.023 kb on + strand, within Shewana3_0316 at 353.115 kb on + strand, within Shewana3_0316 at 353.173 kb on + strand, within Shewana3_0316 at 353.202 kb on - strand, within Shewana3_0316 at 353.291 kb on + strand, within Shewana3_0316
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 350,933 + Shewana3_0312 0.61 -0.7 350,983 + Shewana3_0312 0.66 -0.5 351,436 + Shewana3_0313 0.25 -0.2 351,482 - Shewana3_0313 0.33 -0.2 351,529 - Shewana3_0313 0.40 +0.0 351,575 - Shewana3_0313 0.48 -0.6 351,787 - Shewana3_0313 0.83 -2.6 351,844 - -1.3 352,055 + Shewana3_0314 0.34 -0.4 352,191 + Shewana3_0314 0.66 -0.3 352,380 - -0.4 352,413 - -1.2 352,447 - Shewana3_0315 0.15 -0.5 352,526 - Shewana3_0315 0.33 +0.6 352,621 + Shewana3_0315 0.55 -0.4 352,629 - Shewana3_0315 0.57 +0.4 352,654 + Shewana3_0315 0.62 -0.2 352,654 + Shewana3_0315 0.62 -0.4 352,662 - Shewana3_0315 0.64 -0.6 352,662 - Shewana3_0315 0.64 -0.8 352,765 + Shewana3_0315 0.88 +1.0 352,800 - -0.2 352,909 - -0.0 353,023 + Shewana3_0316 0.12 +0.1 353,115 + Shewana3_0316 0.27 -0.0 353,173 + Shewana3_0316 0.37 +0.1 353,202 - Shewana3_0316 0.42 -0.0 353,291 + Shewana3_0316 0.57 +0.1
Or see this region's nucleotide sequence