Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0308 and Shewana3_0309 are separated by 186 nucleotides Shewana3_0309 and Shewana3_0310 are separated by 29 nucleotides Shewana3_0310 and rbn are separated by 81 nucleotides
Shewana3_0308: Shewana3_0308 - diguanylate cyclase (RefSeq), at 346,356 to 348,101
_0308
Shewana3_0309: Shewana3_0309 - hypothetical protein (RefSeq), at 348,288 to 348,941
_0309
Shewana3_0310: Shewana3_0310 - hypothetical protein (RefSeq), at 348,971 to 349,192
_0310
Shewana3_0311: rbn - ribonuclease BN (RefSeq), at 349,274 to 350,287
rbn
Position (kb) 348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 347.387 kb on + strand, within Shewana3_0308 at 347.394 kb on + strand, within Shewana3_0308 at 347.395 kb on - strand, within Shewana3_0308 at 347.399 kb on + strand, within Shewana3_0308 at 347.412 kb on - strand, within Shewana3_0308 at 347.746 kb on + strand, within Shewana3_0308 at 347.754 kb on - strand, within Shewana3_0308 at 347.779 kb on + strand, within Shewana3_0308 at 347.795 kb on + strand, within Shewana3_0308 at 348.261 kb on - strand at 348.293 kb on - strand at 348.505 kb on + strand, within Shewana3_0309 at 348.505 kb on + strand, within Shewana3_0309 at 348.506 kb on - strand, within Shewana3_0309 at 348.741 kb on - strand, within Shewana3_0309 at 348.746 kb on + strand, within Shewana3_0309 at 348.917 kb on + strand at 348.925 kb on - strand at 348.925 kb on - strand at 348.925 kb on - strand at 348.986 kb on - strand at 349.005 kb on + strand, within Shewana3_0310 at 349.057 kb on + strand, within Shewana3_0310 at 349.057 kb on + strand, within Shewana3_0310 at 349.210 kb on - strand at 349.330 kb on - strand at 349.406 kb on + strand, within rbn at 349.406 kb on + strand, within rbn at 349.414 kb on - strand, within rbn at 349.427 kb on - strand, within rbn at 349.543 kb on - strand, within rbn at 349.543 kb on - strand, within rbn at 349.781 kb on - strand, within rbn at 349.867 kb on + strand, within rbn
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 347,387 + Shewana3_0308 0.59 -1.0 347,394 + Shewana3_0308 0.59 +0.2 347,395 - Shewana3_0308 0.60 +0.3 347,399 + Shewana3_0308 0.60 -0.9 347,412 - Shewana3_0308 0.60 -0.4 347,746 + Shewana3_0308 0.80 +0.1 347,754 - Shewana3_0308 0.80 -0.5 347,779 + Shewana3_0308 0.82 -0.6 347,795 + Shewana3_0308 0.82 -0.1 348,261 - +0.7 348,293 - -0.2 348,505 + Shewana3_0309 0.33 -2.2 348,505 + Shewana3_0309 0.33 -1.2 348,506 - Shewana3_0309 0.33 -0.5 348,741 - Shewana3_0309 0.69 -1.1 348,746 + Shewana3_0309 0.70 -0.8 348,917 + -1.8 348,925 - -1.4 348,925 - +0.6 348,925 - -0.0 348,986 - -1.3 349,005 + Shewana3_0310 0.15 -1.3 349,057 + Shewana3_0310 0.39 -2.1 349,057 + Shewana3_0310 0.39 -0.0 349,210 - -0.0 349,330 - -0.3 349,406 + rbn Shewana3_0311 0.13 -0.4 349,406 + rbn Shewana3_0311 0.13 -3.0 349,414 - rbn Shewana3_0311 0.14 +0.5 349,427 - rbn Shewana3_0311 0.15 -0.4 349,543 - rbn Shewana3_0311 0.27 +0.8 349,543 - rbn Shewana3_0311 0.27 -0.3 349,781 - rbn Shewana3_0311 0.50 -0.2 349,867 + rbn Shewana3_0311 0.58 -0.0
Or see this region's nucleotide sequence