Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0293 and Shewana3_0294 are separated by 283 nucleotides Shewana3_0294 and Shewana3_0295 are separated by 4 nucleotides
Shewana3_0293: Shewana3_0293 - anaerobic C4-dicarboxylate transporter (RefSeq), at 325,290 to 326,633
_0293
Shewana3_0294: Shewana3_0294 - hypothetical protein (RefSeq), at 326,917 to 328,095
_0294
Shewana3_0295: Shewana3_0295 - aminotransferase, class V (RefSeq), at 328,100 to 329,221
_0295
Position (kb) 326
327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 325.958 kb on + strand, within Shewana3_0293 at 326.037 kb on - strand, within Shewana3_0293 at 326.066 kb on - strand, within Shewana3_0293 at 326.146 kb on - strand, within Shewana3_0293 at 326.309 kb on - strand, within Shewana3_0293 at 326.340 kb on + strand, within Shewana3_0293 at 326.509 kb on - strand at 326.527 kb on - strand at 326.573 kb on - strand at 326.677 kb on - strand at 326.929 kb on + strand at 326.945 kb on - strand at 327.008 kb on - strand at 327.008 kb on - strand at 327.085 kb on - strand, within Shewana3_0294 at 327.087 kb on + strand, within Shewana3_0294 at 327.124 kb on + strand, within Shewana3_0294 at 327.124 kb on + strand, within Shewana3_0294 at 327.132 kb on - strand, within Shewana3_0294 at 327.134 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.165 kb on + strand, within Shewana3_0294 at 327.173 kb on - strand, within Shewana3_0294 at 327.601 kb on + strand, within Shewana3_0294 at 327.609 kb on - strand, within Shewana3_0294 at 327.657 kb on + strand, within Shewana3_0294 at 327.756 kb on + strand, within Shewana3_0294 at 327.824 kb on - strand, within Shewana3_0294 at 328.030 kb on + strand at 328.093 kb on - strand at 328.096 kb on + strand at 328.283 kb on + strand, within Shewana3_0295 at 328.338 kb on - strand, within Shewana3_0295 at 328.342 kb on - strand, within Shewana3_0295 at 328.605 kb on + strand, within Shewana3_0295 at 328.747 kb on - strand, within Shewana3_0295 at 328.747 kb on - strand, within Shewana3_0295 at 328.749 kb on - strand, within Shewana3_0295 at 328.786 kb on + strand, within Shewana3_0295 at 328.807 kb on - strand, within Shewana3_0295 at 328.892 kb on - strand, within Shewana3_0295 at 328.928 kb on + strand, within Shewana3_0295
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 325,958 + Shewana3_0293 0.50 -0.8 326,037 - Shewana3_0293 0.56 +0.2 326,066 - Shewana3_0293 0.58 +1.1 326,146 - Shewana3_0293 0.64 -0.8 326,309 - Shewana3_0293 0.76 +0.6 326,340 + Shewana3_0293 0.78 -0.2 326,509 - -0.7 326,527 - +2.1 326,573 - -0.1 326,677 - -0.6 326,929 + -1.2 326,945 - -0.1 327,008 - +1.2 327,008 - +0.2 327,085 - Shewana3_0294 0.14 -0.7 327,087 + Shewana3_0294 0.14 -0.3 327,124 + Shewana3_0294 0.18 +0.2 327,124 + Shewana3_0294 0.18 -0.2 327,132 - Shewana3_0294 0.18 +0.4 327,134 + Shewana3_0294 0.18 +0.6 327,165 + Shewana3_0294 0.21 +0.3 327,165 + Shewana3_0294 0.21 -0.0 327,165 + Shewana3_0294 0.21 -0.9 327,165 + Shewana3_0294 0.21 -0.2 327,165 + Shewana3_0294 0.21 -0.2 327,165 + Shewana3_0294 0.21 -0.4 327,173 - Shewana3_0294 0.22 -0.0 327,601 + Shewana3_0294 0.58 +1.9 327,609 - Shewana3_0294 0.59 -0.3 327,657 + Shewana3_0294 0.63 -0.3 327,756 + Shewana3_0294 0.71 -0.2 327,824 - Shewana3_0294 0.77 +1.0 328,030 + +0.1 328,093 - +0.1 328,096 + -0.0 328,283 + Shewana3_0295 0.16 -0.5 328,338 - Shewana3_0295 0.21 -1.8 328,342 - Shewana3_0295 0.22 -0.8 328,605 + Shewana3_0295 0.45 -2.0 328,747 - Shewana3_0295 0.58 -1.4 328,747 - Shewana3_0295 0.58 -3.0 328,749 - Shewana3_0295 0.58 -0.1 328,786 + Shewana3_0295 0.61 -0.2 328,807 - Shewana3_0295 0.63 -0.1 328,892 - Shewana3_0295 0.71 -0.7 328,928 + Shewana3_0295 0.74 -0.1
Or see this region's nucleotide sequence