Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0289 and Shewana3_0290 are separated by 17 nucleotides Shewana3_0290 and Shewana3_0291 are separated by 189 nucleotides Shewana3_0291 and Shewana3_0292 are separated by 105 nucleotides Shewana3_0292 and Shewana3_0293 are separated by 80 nucleotides
Shewana3_0289: Shewana3_0289 - hypothetical protein (RefSeq), at 321,896 to 322,477
_0289
Shewana3_0290: Shewana3_0290 - CHAP domain-containing protein (RefSeq), at 322,495 to 323,184
_0290
Shewana3_0291: Shewana3_0291 - Zn-dependent hydrolase of the beta-lactamase fold (RefSeq), at 323,374 to 324,492
_0291
Shewana3_0292: Shewana3_0292 - TetR family transcriptional regulator (RefSeq), at 324,598 to 325,209
_0292
Shewana3_0293: Shewana3_0293 - anaerobic C4-dicarboxylate transporter (RefSeq), at 325,290 to 326,633
_0293
Position (kb) 323
324
325 Strain fitness (log2 ratio) -2
-1
0
1
2 at 322.408 kb on + strand, within Shewana3_0289 at 322.418 kb on + strand, within Shewana3_0289 at 322.551 kb on + strand at 322.552 kb on - strand at 322.606 kb on - strand, within Shewana3_0290 at 322.638 kb on - strand, within Shewana3_0290 at 322.696 kb on - strand, within Shewana3_0290 at 322.835 kb on - strand, within Shewana3_0290 at 322.937 kb on - strand, within Shewana3_0290 at 323.017 kb on - strand, within Shewana3_0290 at 323.059 kb on + strand, within Shewana3_0290 at 323.224 kb on + strand at 323.232 kb on - strand at 323.291 kb on + strand at 323.315 kb on + strand at 323.334 kb on + strand at 323.473 kb on - strand at 323.542 kb on - strand, within Shewana3_0291 at 323.556 kb on + strand, within Shewana3_0291 at 323.556 kb on + strand, within Shewana3_0291 at 323.564 kb on - strand, within Shewana3_0291 at 323.612 kb on + strand, within Shewana3_0291 at 323.643 kb on - strand, within Shewana3_0291 at 323.729 kb on - strand, within Shewana3_0291 at 323.900 kb on + strand, within Shewana3_0291 at 324.077 kb on - strand, within Shewana3_0291 at 324.365 kb on - strand, within Shewana3_0291 at 324.810 kb on + strand, within Shewana3_0292 at 324.810 kb on + strand, within Shewana3_0292 at 325.102 kb on - strand, within Shewana3_0292 at 325.102 kb on - strand, within Shewana3_0292 at 325.103 kb on - strand, within Shewana3_0292 at 325.139 kb on + strand, within Shewana3_0292 at 325.342 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 322,408 + Shewana3_0289 0.88 -0.2 322,418 + Shewana3_0289 0.90 +0.4 322,551 + +0.5 322,552 - -0.3 322,606 - Shewana3_0290 0.16 -0.8 322,638 - Shewana3_0290 0.21 +1.5 322,696 - Shewana3_0290 0.29 -1.3 322,835 - Shewana3_0290 0.49 -2.4 322,937 - Shewana3_0290 0.64 -0.4 323,017 - Shewana3_0290 0.76 -0.4 323,059 + Shewana3_0290 0.82 +0.1 323,224 + +0.5 323,232 - -0.6 323,291 + -0.0 323,315 + +0.9 323,334 + -0.5 323,473 - +0.2 323,542 - Shewana3_0291 0.15 -0.2 323,556 + Shewana3_0291 0.16 +0.4 323,556 + Shewana3_0291 0.16 +0.3 323,564 - Shewana3_0291 0.17 -0.3 323,612 + Shewana3_0291 0.21 -0.7 323,643 - Shewana3_0291 0.24 +0.4 323,729 - Shewana3_0291 0.32 +0.9 323,900 + Shewana3_0291 0.47 -0.7 324,077 - Shewana3_0291 0.63 +2.2 324,365 - Shewana3_0291 0.89 +0.1 324,810 + Shewana3_0292 0.35 +1.8 324,810 + Shewana3_0292 0.35 +0.9 325,102 - Shewana3_0292 0.82 -0.2 325,102 - Shewana3_0292 0.82 -0.2 325,103 - Shewana3_0292 0.83 -0.9 325,139 + Shewana3_0292 0.88 +2.3 325,342 - -1.1
Or see this region's nucleotide sequence