Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0255 and Shewana3_0256 are separated by 38 nucleotides Shewana3_0256 and Shewana3_0257 are separated by 186 nucleotides Shewana3_0257 and Shewana3_0258 are separated by 213 nucleotides
Shewana3_0255: Shewana3_0255 - cation diffusion facilitator family transporter (RefSeq), at 286,869 to 287,768
_0255
Shewana3_0256: Shewana3_0256 - hypothetical protein (RefSeq), at 287,807 to 288,217
_0256
Shewana3_0257: Shewana3_0257 - outer membrane protein, putative (RefSeq), at 288,404 to 288,817
_0257
Shewana3_0258: Shewana3_0258 - nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq), at 289,031 to 290,440
_0258
Position (kb) 288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 287.486 kb on - strand, within Shewana3_0255 at 287.494 kb on + strand, within Shewana3_0255 at 287.502 kb on - strand, within Shewana3_0255 at 287.589 kb on - strand, within Shewana3_0255 at 287.599 kb on - strand, within Shewana3_0255 at 287.719 kb on - strand at 287.744 kb on + strand at 287.744 kb on + strand at 287.809 kb on + strand at 287.841 kb on - strand at 287.886 kb on + strand, within Shewana3_0256 at 287.921 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.988 kb on + strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 287.996 kb on - strand, within Shewana3_0256 at 288.055 kb on - strand, within Shewana3_0256 at 288.093 kb on + strand, within Shewana3_0256 at 288.101 kb on - strand, within Shewana3_0256 at 288.101 kb on - strand, within Shewana3_0256 at 288.102 kb on + strand, within Shewana3_0256 at 288.102 kb on + strand, within Shewana3_0256 at 288.110 kb on - strand, within Shewana3_0256 at 288.138 kb on + strand, within Shewana3_0256 at 288.157 kb on - strand, within Shewana3_0256 at 288.157 kb on - strand, within Shewana3_0256 at 288.384 kb on - strand at 288.389 kb on - strand at 288.460 kb on + strand, within Shewana3_0257 at 288.473 kb on + strand, within Shewana3_0257 at 288.518 kb on + strand, within Shewana3_0257 at 288.519 kb on + strand, within Shewana3_0257 at 288.526 kb on - strand, within Shewana3_0257 at 288.526 kb on - strand, within Shewana3_0257 at 288.528 kb on - strand, within Shewana3_0257 at 288.550 kb on - strand, within Shewana3_0257 at 288.562 kb on - strand, within Shewana3_0257 at 288.706 kb on + strand, within Shewana3_0257 at 288.818 kb on - strand at 288.835 kb on + strand at 289.090 kb on - strand at 289.124 kb on + strand at 289.124 kb on + strand at 289.132 kb on - strand at 289.132 kb on - strand at 289.137 kb on - strand at 289.211 kb on + strand, within Shewana3_0258 at 289.269 kb on - strand, within Shewana3_0258 at 289.286 kb on - strand, within Shewana3_0258 at 289.388 kb on - strand, within Shewana3_0258 at 289.388 kb on - strand, within Shewana3_0258 at 289.471 kb on + strand, within Shewana3_0258
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 287,486 - Shewana3_0255 0.69 +0.2 287,494 + Shewana3_0255 0.69 -0.3 287,502 - Shewana3_0255 0.70 -0.4 287,589 - Shewana3_0255 0.80 -0.7 287,599 - Shewana3_0255 0.81 -3.5 287,719 - -1.4 287,744 + +1.4 287,744 + +0.5 287,809 + +0.5 287,841 - -1.6 287,886 + Shewana3_0256 0.19 -0.3 287,921 + Shewana3_0256 0.28 -0.6 287,988 + Shewana3_0256 0.44 -0.5 287,988 + Shewana3_0256 0.44 +0.8 287,988 + Shewana3_0256 0.44 -0.7 287,988 + Shewana3_0256 0.44 -0.6 287,988 + Shewana3_0256 0.44 +0.4 287,988 + Shewana3_0256 0.44 -0.6 287,988 + Shewana3_0256 0.44 -0.7 287,996 - Shewana3_0256 0.46 -1.3 287,996 - Shewana3_0256 0.46 +0.1 287,996 - Shewana3_0256 0.46 -0.4 287,996 - Shewana3_0256 0.46 -0.4 287,996 - Shewana3_0256 0.46 -0.6 287,996 - Shewana3_0256 0.46 -0.3 288,055 - Shewana3_0256 0.60 -0.2 288,093 + Shewana3_0256 0.70 +0.2 288,101 - Shewana3_0256 0.72 +1.0 288,101 - Shewana3_0256 0.72 -0.6 288,102 + Shewana3_0256 0.72 -0.7 288,102 + Shewana3_0256 0.72 -0.7 288,110 - Shewana3_0256 0.74 -0.3 288,138 + Shewana3_0256 0.81 -0.4 288,157 - Shewana3_0256 0.85 +0.0 288,157 - Shewana3_0256 0.85 -1.0 288,384 - -0.3 288,389 - +0.2 288,460 + Shewana3_0257 0.14 +0.7 288,473 + Shewana3_0257 0.17 +0.6 288,518 + Shewana3_0257 0.28 +0.7 288,519 + Shewana3_0257 0.28 +1.0 288,526 - Shewana3_0257 0.29 -0.2 288,526 - Shewana3_0257 0.29 -0.2 288,528 - Shewana3_0257 0.30 -0.9 288,550 - Shewana3_0257 0.35 -2.1 288,562 - Shewana3_0257 0.38 +0.9 288,706 + Shewana3_0257 0.73 +0.3 288,818 - -0.2 288,835 + +4.4 289,090 - +1.2 289,124 + +1.3 289,124 + +0.4 289,132 - +0.6 289,132 - +1.0 289,137 - +1.0 289,211 + Shewana3_0258 0.13 +0.8 289,269 - Shewana3_0258 0.17 +0.9 289,286 - Shewana3_0258 0.18 +0.8 289,388 - Shewana3_0258 0.25 +0.6 289,388 - Shewana3_0258 0.25 +1.0 289,471 + Shewana3_0258 0.31 +0.7
Or see this region's nucleotide sequence