Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0153 and Shewana3_0154 are separated by 69 nucleotides Shewana3_0154 and Shewana3_0155 are separated by 1 nucleotides Shewana3_0155 and Shewana3_0156 overlap by 14 nucleotides Shewana3_0156 and Shewana3_0157 overlap by 20 nucleotides
Shewana3_0153: Shewana3_0153 - general secretion pathway protein F (RefSeq), at 178,677 to 179,900
_0153
Shewana3_0154: Shewana3_0154 - general secretion pathway protein G (RefSeq), at 179,970 to 180,404
_0154
Shewana3_0155: Shewana3_0155 - general secretion pathway protein H (RefSeq), at 180,406 to 180,978
_0155
Shewana3_0156: Shewana3_0156 - general secretion pathway protein I (RefSeq), at 180,965 to 181,333
_0156
Shewana3_0157: Shewana3_0157 - general secretion pathway protein J (RefSeq), at 181,314 to 182,081
_0157
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 179.023 kb on + strand, within Shewana3_0153 at 179.031 kb on - strand, within Shewana3_0153 at 179.031 kb on - strand, within Shewana3_0153 at 179.474 kb on + strand, within Shewana3_0153 at 179.483 kb on + strand, within Shewana3_0153 at 179.491 kb on - strand, within Shewana3_0153 at 179.530 kb on + strand, within Shewana3_0153 at 179.598 kb on + strand, within Shewana3_0153 at 179.637 kb on + strand, within Shewana3_0153 at 179.654 kb on + strand, within Shewana3_0153 at 179.666 kb on + strand, within Shewana3_0153 at 179.698 kb on + strand, within Shewana3_0153 at 179.711 kb on - strand, within Shewana3_0153 at 179.728 kb on - strand, within Shewana3_0153 at 179.786 kb on + strand at 179.995 kb on + strand at 180.294 kb on + strand, within Shewana3_0154 at 180.314 kb on - strand, within Shewana3_0154 at 180.329 kb on + strand, within Shewana3_0154 at 180.405 kb on + strand at 180.413 kb on - strand at 180.683 kb on - strand, within Shewana3_0155 at 180.748 kb on + strand, within Shewana3_0155 at 180.792 kb on + strand, within Shewana3_0155 at 180.877 kb on - strand, within Shewana3_0155 at 180.917 kb on + strand, within Shewana3_0155 at 180.950 kb on + strand at 180.957 kb on - strand at 180.979 kb on + strand at 180.979 kb on + strand at 180.979 kb on + strand at 180.979 kb on + strand at 180.987 kb on - strand at 181.053 kb on + strand, within Shewana3_0156 at 181.199 kb on + strand, within Shewana3_0156 at 181.303 kb on + strand at 181.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 179,023 + Shewana3_0153 0.28 +0.1 179,031 - Shewana3_0153 0.29 -0.7 179,031 - Shewana3_0153 0.29 -1.6 179,474 + Shewana3_0153 0.65 -0.8 179,483 + Shewana3_0153 0.66 -0.7 179,491 - Shewana3_0153 0.67 -3.3 179,530 + Shewana3_0153 0.70 -1.5 179,598 + Shewana3_0153 0.75 -0.1 179,637 + Shewana3_0153 0.78 +0.2 179,654 + Shewana3_0153 0.80 -0.3 179,666 + Shewana3_0153 0.81 -0.9 179,698 + Shewana3_0153 0.83 -1.4 179,711 - Shewana3_0153 0.84 -0.9 179,728 - Shewana3_0153 0.86 -1.3 179,786 + -1.3 179,995 + -0.7 180,294 + Shewana3_0154 0.74 -0.6 180,314 - Shewana3_0154 0.79 -2.5 180,329 + Shewana3_0154 0.83 -0.8 180,405 + +0.1 180,413 - -0.6 180,683 - Shewana3_0155 0.48 -0.2 180,748 + Shewana3_0155 0.60 -1.0 180,792 + Shewana3_0155 0.67 -2.6 180,877 - Shewana3_0155 0.82 -1.1 180,917 + Shewana3_0155 0.89 +0.9 180,950 + -0.4 180,957 - -1.7 180,979 + -1.0 180,979 + -0.1 180,979 + +0.1 180,979 + -0.7 180,987 - -1.3 181,053 + Shewana3_0156 0.24 -1.4 181,199 + Shewana3_0156 0.63 -2.7 181,303 + -0.4 181,353 - -0.0
Or see this region's nucleotide sequence