Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0150 and Shewana3_0151 are separated by 24 nucleotides Shewana3_0151 and Shewana3_0152 overlap by 4 nucleotides
Shewana3_0150: Shewana3_0150 - general secretion pathway protein C (RefSeq), at 174,052 to 174,978
_0150
Shewana3_0151: Shewana3_0151 - general secretion pathway protein D (RefSeq), at 175,003 to 177,111
_0151
Shewana3_0152: Shewana3_0152 - type II secretion system protein E (GspE) (RefSeq), at 177,108 to 178,673
_0152
Position (kb) 175
176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 174.039 kb on - strand at 174.081 kb on + strand at 174.272 kb on + strand, within Shewana3_0150 at 174.335 kb on - strand, within Shewana3_0150 at 174.335 kb on - strand, within Shewana3_0150 at 174.465 kb on + strand, within Shewana3_0150 at 174.473 kb on - strand, within Shewana3_0150 at 174.561 kb on + strand, within Shewana3_0150 at 174.564 kb on - strand, within Shewana3_0150 at 174.694 kb on + strand, within Shewana3_0150 at 174.701 kb on - strand, within Shewana3_0150 at 174.800 kb on + strand, within Shewana3_0150 at 175.055 kb on + strand at 175.103 kb on + strand at 175.169 kb on + strand at 175.208 kb on + strand at 175.208 kb on + strand at 175.216 kb on - strand, within Shewana3_0151 at 175.216 kb on - strand, within Shewana3_0151 at 175.231 kb on - strand, within Shewana3_0151 at 175.264 kb on + strand, within Shewana3_0151 at 175.272 kb on - strand, within Shewana3_0151 at 175.369 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.407 kb on + strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.415 kb on - strand, within Shewana3_0151 at 175.493 kb on - strand, within Shewana3_0151 at 175.589 kb on + strand, within Shewana3_0151 at 175.794 kb on + strand, within Shewana3_0151 at 175.802 kb on - strand, within Shewana3_0151 at 175.802 kb on - strand, within Shewana3_0151 at 175.811 kb on - strand, within Shewana3_0151 at 175.953 kb on + strand, within Shewana3_0151 at 176.039 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.231 kb on - strand, within Shewana3_0151 at 176.231 kb on - strand, within Shewana3_0151 at 176.290 kb on + strand, within Shewana3_0151 at 176.298 kb on - strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.477 kb on + strand, within Shewana3_0151 at 176.528 kb on - strand, within Shewana3_0151 at 176.677 kb on - strand, within Shewana3_0151 at 176.733 kb on - strand, within Shewana3_0151 at 176.734 kb on + strand, within Shewana3_0151 at 177.033 kb on - strand at 177.033 kb on - strand at 177.040 kb on + strand at 177.181 kb on + strand at 177.284 kb on + strand, within Shewana3_0152 at 177.292 kb on - strand, within Shewana3_0152 at 177.364 kb on - strand, within Shewana3_0152 at 177.547 kb on - strand, within Shewana3_0152 at 177.547 kb on - strand, within Shewana3_0152 at 177.934 kb on + strand, within Shewana3_0152 at 178.087 kb on - strand, within Shewana3_0152 at 178.108 kb on + strand, within Shewana3_0152
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 174,039 - -1.1 174,081 + -0.0 174,272 + Shewana3_0150 0.24 -1.6 174,335 - Shewana3_0150 0.31 +2.1 174,335 - Shewana3_0150 0.31 -0.0 174,465 + Shewana3_0150 0.45 -2.6 174,473 - Shewana3_0150 0.45 -1.2 174,561 + Shewana3_0150 0.55 +0.9 174,564 - Shewana3_0150 0.55 -1.0 174,694 + Shewana3_0150 0.69 +1.4 174,701 - Shewana3_0150 0.70 -1.5 174,800 + Shewana3_0150 0.81 -0.1 175,055 + -1.9 175,103 + -0.7 175,169 + -2.5 175,208 + -0.5 175,208 + -2.1 175,216 - Shewana3_0151 0.10 -1.2 175,216 - Shewana3_0151 0.10 -0.6 175,231 - Shewana3_0151 0.11 -2.4 175,264 + Shewana3_0151 0.12 -0.6 175,272 - Shewana3_0151 0.13 -1.2 175,369 + Shewana3_0151 0.17 -0.4 175,407 + Shewana3_0151 0.19 -2.3 175,407 + Shewana3_0151 0.19 -1.1 175,407 + Shewana3_0151 0.19 -2.0 175,415 - Shewana3_0151 0.20 -1.3 175,415 - Shewana3_0151 0.20 -1.3 175,415 - Shewana3_0151 0.20 -0.9 175,493 - Shewana3_0151 0.23 -1.1 175,589 + Shewana3_0151 0.28 -1.5 175,794 + Shewana3_0151 0.38 -1.5 175,802 - Shewana3_0151 0.38 -2.1 175,802 - Shewana3_0151 0.38 -0.9 175,811 - Shewana3_0151 0.38 -1.5 175,953 + Shewana3_0151 0.45 -2.3 176,039 + Shewana3_0151 0.49 -0.3 176,223 + Shewana3_0151 0.58 -0.5 176,223 + Shewana3_0151 0.58 -0.5 176,223 + Shewana3_0151 0.58 +0.8 176,223 + Shewana3_0151 0.58 -2.9 176,231 - Shewana3_0151 0.58 -0.9 176,231 - Shewana3_0151 0.58 -1.3 176,290 + Shewana3_0151 0.61 -0.8 176,298 - Shewana3_0151 0.61 -1.4 176,349 + Shewana3_0151 0.64 -2.6 176,349 + Shewana3_0151 0.64 -0.2 176,349 + Shewana3_0151 0.64 +0.7 176,477 + Shewana3_0151 0.70 -1.7 176,528 - Shewana3_0151 0.72 -2.1 176,677 - Shewana3_0151 0.79 -1.9 176,733 - Shewana3_0151 0.82 -1.4 176,734 + Shewana3_0151 0.82 -3.0 177,033 - -2.4 177,033 - -0.9 177,040 + +0.3 177,181 + -2.8 177,284 + Shewana3_0152 0.11 -1.4 177,292 - Shewana3_0152 0.12 +2.7 177,364 - Shewana3_0152 0.16 -0.4 177,547 - Shewana3_0152 0.28 -0.8 177,547 - Shewana3_0152 0.28 -1.4 177,934 + Shewana3_0152 0.53 -0.0 178,087 - Shewana3_0152 0.63 -0.6 178,108 + Shewana3_0152 0.64 -0.1
Or see this region's nucleotide sequence