Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0139 and Shewana3_0140 are separated by 25 nucleotides Shewana3_0140 and Shewana3_0141 are separated by 130 nucleotides
Shewana3_0139: Shewana3_0139 - methyltransferase type 12 (RefSeq), at 158,822 to 159,589
_0139
Shewana3_0140: Shewana3_0140 - peptidase M14, carboxypeptidase A (RefSeq), at 159,615 to 161,594
_0140
Shewana3_0141: Shewana3_0141 - hypothetical protein (RefSeq), at 161,725 to 162,843
_0141
Position (kb) 159
160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2 at 159.346 kb on + strand, within Shewana3_0139 at 159.380 kb on + strand, within Shewana3_0139 at 159.380 kb on + strand, within Shewana3_0139 at 159.413 kb on - strand, within Shewana3_0139 at 159.446 kb on - strand, within Shewana3_0139 at 159.572 kb on - strand at 159.682 kb on - strand at 159.721 kb on - strand at 159.822 kb on + strand, within Shewana3_0140 at 159.830 kb on - strand, within Shewana3_0140 at 159.901 kb on + strand, within Shewana3_0140 at 159.906 kb on + strand, within Shewana3_0140 at 159.914 kb on - strand, within Shewana3_0140 at 159.914 kb on - strand, within Shewana3_0140 at 159.914 kb on - strand, within Shewana3_0140 at 159.946 kb on + strand, within Shewana3_0140 at 159.965 kb on + strand, within Shewana3_0140 at 159.973 kb on - strand, within Shewana3_0140 at 159.973 kb on - strand, within Shewana3_0140 at 160.029 kb on - strand, within Shewana3_0140 at 160.079 kb on + strand, within Shewana3_0140 at 160.118 kb on - strand, within Shewana3_0140 at 160.205 kb on + strand, within Shewana3_0140 at 160.205 kb on + strand, within Shewana3_0140 at 160.214 kb on + strand, within Shewana3_0140 at 160.231 kb on + strand, within Shewana3_0140 at 160.292 kb on - strand, within Shewana3_0140 at 160.329 kb on - strand, within Shewana3_0140 at 160.426 kb on - strand, within Shewana3_0140 at 160.442 kb on + strand, within Shewana3_0140 at 160.450 kb on - strand, within Shewana3_0140 at 160.459 kb on - strand, within Shewana3_0140 at 160.536 kb on - strand, within Shewana3_0140 at 160.593 kb on + strand, within Shewana3_0140 at 160.641 kb on + strand, within Shewana3_0140 at 160.652 kb on + strand, within Shewana3_0140 at 160.687 kb on - strand, within Shewana3_0140 at 160.692 kb on + strand, within Shewana3_0140 at 160.698 kb on + strand, within Shewana3_0140 at 160.751 kb on + strand, within Shewana3_0140 at 161.219 kb on + strand, within Shewana3_0140 at 161.286 kb on + strand, within Shewana3_0140 at 161.433 kb on + strand at 161.433 kb on + strand at 161.493 kb on - strand at 161.678 kb on - strand at 161.726 kb on + strand at 161.795 kb on + strand at 161.847 kb on - strand, within Shewana3_0141 at 161.938 kb on + strand, within Shewana3_0141 at 162.327 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.426 kb on + strand, within Shewana3_0141 at 162.434 kb on - strand, within Shewana3_0141 at 162.434 kb on - strand, within Shewana3_0141 at 162.526 kb on - strand, within Shewana3_0141 at 162.589 kb on + strand, within Shewana3_0141
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 159,346 + Shewana3_0139 0.68 +0.4 159,380 + Shewana3_0139 0.73 -0.0 159,380 + Shewana3_0139 0.73 +0.2 159,413 - Shewana3_0139 0.77 -1.3 159,446 - Shewana3_0139 0.81 +0.1 159,572 - +0.3 159,682 - -0.0 159,721 - +0.0 159,822 + Shewana3_0140 0.10 -0.8 159,830 - Shewana3_0140 0.11 +0.3 159,901 + Shewana3_0140 0.14 -0.7 159,906 + Shewana3_0140 0.15 -0.8 159,914 - Shewana3_0140 0.15 -0.1 159,914 - Shewana3_0140 0.15 +0.3 159,914 - Shewana3_0140 0.15 +0.5 159,946 + Shewana3_0140 0.17 -1.0 159,965 + Shewana3_0140 0.18 -1.0 159,973 - Shewana3_0140 0.18 -0.9 159,973 - Shewana3_0140 0.18 +1.0 160,029 - Shewana3_0140 0.21 -0.6 160,079 + Shewana3_0140 0.23 -1.7 160,118 - Shewana3_0140 0.25 -1.2 160,205 + Shewana3_0140 0.30 -0.9 160,205 + Shewana3_0140 0.30 -0.9 160,214 + Shewana3_0140 0.30 -0.5 160,231 + Shewana3_0140 0.31 -0.2 160,292 - Shewana3_0140 0.34 -0.4 160,329 - Shewana3_0140 0.36 +0.6 160,426 - Shewana3_0140 0.41 -0.5 160,442 + Shewana3_0140 0.42 +0.3 160,450 - Shewana3_0140 0.42 -0.6 160,459 - Shewana3_0140 0.43 -0.1 160,536 - Shewana3_0140 0.47 -1.9 160,593 + Shewana3_0140 0.49 -0.3 160,641 + Shewana3_0140 0.52 -1.2 160,652 + Shewana3_0140 0.52 -0.9 160,687 - Shewana3_0140 0.54 +0.5 160,692 + Shewana3_0140 0.54 -1.0 160,698 + Shewana3_0140 0.55 -1.0 160,751 + Shewana3_0140 0.57 -0.5 161,219 + Shewana3_0140 0.81 -0.5 161,286 + Shewana3_0140 0.84 -0.2 161,433 + -0.9 161,433 + -1.9 161,493 - -0.6 161,678 - -0.1 161,726 + +0.1 161,795 + -0.2 161,847 - Shewana3_0141 0.11 -0.1 161,938 + Shewana3_0141 0.19 +1.8 162,327 + Shewana3_0141 0.54 +0.1 162,426 + Shewana3_0141 0.63 -0.7 162,426 + Shewana3_0141 0.63 +2.7 162,426 + Shewana3_0141 0.63 -0.7 162,434 - Shewana3_0141 0.63 -0.5 162,434 - Shewana3_0141 0.63 +0.1 162,526 - Shewana3_0141 0.72 +0.2 162,589 + Shewana3_0141 0.77 -0.4
Or see this region's nucleotide sequence