Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0131 and Shewana3_0132 are separated by 247 nucleotides Shewana3_0132 and Shewana3_0133 are separated by 75 nucleotides
Shewana3_0131: Shewana3_0131 - molybdopterin molybdochelatase (RefSeq), at 146,271 to 147,605
_0131
Shewana3_0132: Shewana3_0132 - Ferritin, Dps family protein (RefSeq), at 147,853 to 148,389
_0132
Shewana3_0133: Shewana3_0133 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 148,465 to 151,698
_0133
Position (kb) 147
148
149 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 146.990 kb on - strand, within Shewana3_0131 at 147.011 kb on - strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.106 kb on + strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.108 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.114 kb on - strand, within Shewana3_0131 at 147.140 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.439 kb on + strand, within Shewana3_0131 at 147.528 kb on - strand at 147.581 kb on + strand at 147.592 kb on + strand at 147.602 kb on + strand at 147.661 kb on - strand at 147.949 kb on + strand, within Shewana3_0132 at 148.042 kb on + strand, within Shewana3_0132 at 148.218 kb on + strand, within Shewana3_0132 at 148.646 kb on + strand at 148.690 kb on - strand at 148.716 kb on - strand at 148.804 kb on - strand, within Shewana3_0133 at 148.861 kb on + strand, within Shewana3_0133 at 148.931 kb on + strand, within Shewana3_0133 at 148.945 kb on + strand, within Shewana3_0133 at 148.945 kb on - strand, within Shewana3_0133 at 148.975 kb on + strand, within Shewana3_0133 at 149.027 kb on + strand, within Shewana3_0133 at 149.104 kb on + strand, within Shewana3_0133 at 149.132 kb on + strand, within Shewana3_0133 at 149.145 kb on - strand, within Shewana3_0133 at 149.150 kb on - strand, within Shewana3_0133 at 149.150 kb on - strand, within Shewana3_0133 at 149.150 kb on - strand, within Shewana3_0133 at 149.234 kb on + strand, within Shewana3_0133 at 149.277 kb on - strand, within Shewana3_0133
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 146,990 - Shewana3_0131 0.54 +0.2 147,011 - Shewana3_0131 0.55 +0.7 147,106 + Shewana3_0131 0.63 +1.0 147,106 + Shewana3_0131 0.63 +0.4 147,106 + Shewana3_0131 0.63 +0.1 147,106 + Shewana3_0131 0.63 -0.0 147,106 + Shewana3_0131 0.63 +0.1 147,108 - Shewana3_0131 0.63 -0.1 147,108 - Shewana3_0131 0.63 -0.6 147,108 - Shewana3_0131 0.63 +2.2 147,108 - Shewana3_0131 0.63 +0.1 147,114 - Shewana3_0131 0.63 +0.5 147,114 - Shewana3_0131 0.63 +0.5 147,114 - Shewana3_0131 0.63 -0.3 147,114 - Shewana3_0131 0.63 +0.6 147,140 + Shewana3_0131 0.65 +0.7 147,439 + Shewana3_0131 0.87 +0.1 147,439 + Shewana3_0131 0.87 -1.3 147,439 + Shewana3_0131 0.87 +0.7 147,439 + Shewana3_0131 0.87 +0.0 147,528 - -0.0 147,581 + -1.5 147,592 + +0.0 147,602 + -0.5 147,661 - -0.4 147,949 + Shewana3_0132 0.18 +2.0 148,042 + Shewana3_0132 0.35 +0.4 148,218 + Shewana3_0132 0.68 -0.0 148,646 + -0.3 148,690 - +0.0 148,716 - +0.1 148,804 - Shewana3_0133 0.10 -1.3 148,861 + Shewana3_0133 0.12 -0.1 148,931 + Shewana3_0133 0.14 -4.4 148,945 + Shewana3_0133 0.15 -0.2 148,945 - Shewana3_0133 0.15 +0.5 148,975 + Shewana3_0133 0.16 -0.0 149,027 + Shewana3_0133 0.17 -0.6 149,104 + Shewana3_0133 0.20 +0.9 149,132 + Shewana3_0133 0.21 -0.2 149,145 - Shewana3_0133 0.21 -0.3 149,150 - Shewana3_0133 0.21 -0.1 149,150 - Shewana3_0133 0.21 +1.3 149,150 - Shewana3_0133 0.21 -0.5 149,234 + Shewana3_0133 0.24 -0.2 149,277 - Shewana3_0133 0.25 -0.9
Or see this region's nucleotide sequence