Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4387 and Shewana3_4388 are separated by 8 nucleotides Shewana3_4388 and Shewana3_4389 are separated by 87 nucleotides Shewana3_4389 and Shewana3_4390 are separated by 131 nucleotides
Shewana3_4387: Shewana3_4387 - peptidase M56, BlaR1 (RefSeq), at 274,941 to 275,921
_4387
Shewana3_4388: Shewana3_4388 - transcriptional regulator, TrmB (RefSeq), at 275,930 to 276,307
_4388
Shewana3_4389: Shewana3_4389 - hypothetical protein (RefSeq), at 276,395 to 276,745
_4389
Shewana3_4390: Shewana3_4390 - LysR family transcriptional regulator (RefSeq), at 276,877 to 277,758
_4390
Position (kb) 275
276
277 Strain fitness (log2 ratio) -2
-1
0
1 at 275.004 kb on - strand at 275.059 kb on + strand, within Shewana3_4387 at 275.232 kb on - strand, within Shewana3_4387 at 275.404 kb on + strand, within Shewana3_4387 at 275.438 kb on - strand, within Shewana3_4387 at 275.491 kb on + strand, within Shewana3_4387 at 275.497 kb on - strand, within Shewana3_4387 at 275.561 kb on - strand, within Shewana3_4387 at 275.733 kb on + strand, within Shewana3_4387 at 275.733 kb on + strand, within Shewana3_4387 at 275.741 kb on - strand, within Shewana3_4387 at 275.752 kb on + strand, within Shewana3_4387 at 275.833 kb on - strand at 276.043 kb on - strand, within Shewana3_4388 at 276.144 kb on - strand, within Shewana3_4388 at 276.215 kb on - strand, within Shewana3_4388 at 276.332 kb on + strand at 276.429 kb on - strand at 276.701 kb on - strand, within Shewana3_4389 at 276.774 kb on - strand at 277.103 kb on - strand, within Shewana3_4390 at 277.109 kb on + strand, within Shewana3_4390 at 277.272 kb on + strand, within Shewana3_4390
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 275,004 - +0.6 275,059 + Shewana3_4387 0.12 -1.7 275,232 - Shewana3_4387 0.30 +0.0 275,404 + Shewana3_4387 0.47 -0.7 275,438 - Shewana3_4387 0.51 +0.6 275,491 + Shewana3_4387 0.56 -1.7 275,497 - Shewana3_4387 0.57 -0.2 275,561 - Shewana3_4387 0.63 -0.4 275,733 + Shewana3_4387 0.81 +0.0 275,733 + Shewana3_4387 0.81 -0.9 275,741 - Shewana3_4387 0.82 +0.1 275,752 + Shewana3_4387 0.83 +0.0 275,833 - +0.0 276,043 - Shewana3_4388 0.30 +0.7 276,144 - Shewana3_4388 0.57 +0.3 276,215 - Shewana3_4388 0.75 +0.6 276,332 + -1.3 276,429 - -0.9 276,701 - Shewana3_4389 0.87 -2.0 276,774 - -0.1 277,103 - Shewana3_4390 0.26 -0.3 277,109 + Shewana3_4390 0.26 -1.0 277,272 + Shewana3_4390 0.45 -0.2
Or see this region's nucleotide sequence