Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4371

Experiment: Rifampicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.001 mg/ml
258,421	+				-0.9
258,421	+				-1.5
258,456	+				-1.1
258,483	+				-3.0
258,483	+				-1.4
258,491	-				+0.0
258,497	+				+0.6
258,543	-				-0.4
258,590	+				+1.6
258,603	-				-2.6
258,607	-				+0.3
258,640	+				-0.3
258,640	+				+1.6
258,640	+				-0.2
258,648	-				-1.0
258,648	-				-1.6
258,648	-				-1.5
258,648	-				-1.5
258,648	-				-1.4
258,648	-				+0.2
258,648	-				+0.1
258,648	-				-2.5
258,648	-				+3.4
258,648	-				-0.7
258,648	-				-0.3
258,648	-				-1.3
258,648	-				-0.8
258,653	-				-0.2
258,664	+				+0.6
258,671	+				+1.6
258,671	+				+0.9
258,671	+				-0.4
258,671	+				+0.6
258,672	-				-1.1
258,679	-				+0.7
258,679	-				-0.2
258,679	-				-0.5
258,679	-				-0.3
258,679	-				-1.7
258,679	-				+0.1
258,679	-				-2.4
258,680	-				-0.9
258,702	+				+0.6
258,703	-		Shewana3_4370	0.11	+0.3
258,703	-		Shewana3_4370	0.11	-3.6
258,703	-		Shewana3_4370	0.11	-0.6
258,764	+		Shewana3_4370	0.21	+0.6
258,784	-		Shewana3_4370	0.25	-2.0
258,784	-		Shewana3_4370	0.25	+0.6
258,872	-		Shewana3_4370	0.40	-0.5
258,929	-		Shewana3_4370	0.50	-1.0
258,929	-		Shewana3_4370	0.50	-1.4
258,929	-		Shewana3_4370	0.50	-0.9
259,059	+		Shewana3_4370	0.72	-0.4
259,059	+		Shewana3_4370	0.72	-1.7
259,064	+		Shewana3_4370	0.73	+0.0
259,081	-		Shewana3_4370	0.76	+0.4
259,081	-		Shewana3_4370	0.76	-0.7
259,086	-		Shewana3_4370	0.77	-1.3
259,086	-		Shewana3_4370	0.77	+1.0
259,157	-		Shewana3_4370	0.89	-1.7
259,159	+		Shewana3_4370	0.89	+0.6
259,159	+		Shewana3_4370	0.89	+0.0
259,159	+		Shewana3_4370	0.89	+0.0
259,159	+		Shewana3_4370	0.89	-0.4
259,159	+		Shewana3_4370	0.89	+0.6
259,159	+		Shewana3_4370	0.89	+1.6
259,160	-		Shewana3_4370	0.89	+1.7
259,167	-				-2.2
259,167	-				-1.2
259,167	-				+1.4
259,167	-				-0.6
259,167	-				+1.3
259,167	-				+0.5
259,167	-				-0.4
259,167	-				-1.9
259,167	-				-0.4
259,167	-				+0.9
259,167	-				-2.0
259,167	-				-0.7
259,167	-				-1.3
259,167	-				-0.4
259,167	-				-1.2
259,167	-				-1.7
259,167	-				+0.4
259,167	-				+1.7
259,167	-				-1.0
259,167	-				+1.2
259,167	-				-1.9
259,167	-				-0.7
259,167	-				-1.2
259,168	-				-1.2
259,168	-				-1.0
259,226	-				+0.7
259,253	-				-2.6
259,334	+				+0.9
259,342	-				-1.4
259,429	-				-2.1
259,429	-				-0.8
259,478	+		Shewana3_4371	0.14	-1.6
259,478	+		Shewana3_4371	0.14	-0.9
259,486	-		Shewana3_4371	0.16	+1.6
259,551	+		Shewana3_4371	0.31	-1.7
259,560	+		Shewana3_4371	0.33	-0.7
259,560	+		Shewana3_4371	0.33	-1.7
259,572	+		Shewana3_4371	0.36	+0.9
259,577	+		Shewana3_4371	0.37	+0.6
259,578	-		Shewana3_4371	0.38	-1.3
259,578	-		Shewana3_4371	0.38	-0.7
259,578	-		Shewana3_4371	0.38	+0.6
259,580	-		Shewana3_4371	0.38	-1.0
259,580	-		Shewana3_4371	0.38	-2.2
259,580	-		Shewana3_4371	0.38	-0.7
259,585	-		Shewana3_4371	0.39	+2.6
259,592	+		Shewana3_4371	0.41	+1.6
259,595	-		Shewana3_4371	0.41	-1.0
259,673	+				+1.6
259,694	-		Shewana3_4371	0.65	-1.7
259,709	+		Shewana3_4371	0.68	-0.7
259,717	-		Shewana3_4371	0.70	-0.5
259,728	+		Shewana3_4371	0.72	+0.0
259,729	+		Shewana3_4371	0.73	-0.7
259,749	+				+0.6
259,792	-		Shewana3_4371	0.87	-1.3
259,847	+				-2.6
259,855	+				-0.1
259,873	+				+0.2
260,201	-				-1.3
260,201	-				-0.2
260,685	+				-0.6
260,693	-				-0.8
260,836	-		Shewana3_4372	0.13	+0.6