Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4354 and Shewana3_4355 are separated by 1 nucleotides Shewana3_4355 and Shewana3_4356 are separated by 200 nucleotides Shewana3_4356 and Shewana3_4357 are separated by 9 nucleotides
Shewana3_4354: Shewana3_4354 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 238,948 to 240,675
_4354
Shewana3_4355: Shewana3_4355 - hypothetical protein (RefSeq), at 240,677 to 241,708
_4355
Shewana3_4356: Shewana3_4356 - XRE family transcriptional regulator (RefSeq), at 241,909 to 242,253
_4356
Shewana3_4357: Shewana3_4357 - hypothetical protein (RefSeq), at 242,263 to 243,072
_4357
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2 at 239.688 kb on + strand, within Shewana3_4354 at 239.701 kb on + strand, within Shewana3_4354 at 239.739 kb on - strand, within Shewana3_4354 at 239.744 kb on + strand, within Shewana3_4354 at 239.767 kb on - strand, within Shewana3_4354 at 239.767 kb on - strand, within Shewana3_4354 at 239.859 kb on + strand, within Shewana3_4354 at 239.960 kb on + strand, within Shewana3_4354 at 240.038 kb on - strand, within Shewana3_4354 at 240.082 kb on - strand, within Shewana3_4354 at 240.149 kb on + strand, within Shewana3_4354 at 240.246 kb on + strand, within Shewana3_4354 at 240.284 kb on + strand, within Shewana3_4354 at 240.284 kb on - strand, within Shewana3_4354 at 240.415 kb on + strand, within Shewana3_4354 at 240.422 kb on - strand, within Shewana3_4354 at 240.533 kb on - strand at 240.713 kb on + strand at 240.713 kb on + strand at 240.845 kb on - strand, within Shewana3_4355 at 240.935 kb on - strand, within Shewana3_4355 at 240.950 kb on - strand, within Shewana3_4355 at 241.161 kb on + strand, within Shewana3_4355 at 241.252 kb on + strand, within Shewana3_4355 at 241.379 kb on - strand, within Shewana3_4355 at 241.485 kb on + strand, within Shewana3_4355 at 241.493 kb on - strand, within Shewana3_4355 at 241.494 kb on + strand, within Shewana3_4355 at 241.617 kb on - strand at 241.621 kb on - strand at 241.629 kb on - strand at 241.643 kb on + strand at 241.644 kb on + strand at 241.652 kb on - strand at 241.774 kb on + strand at 241.774 kb on + strand at 241.782 kb on - strand at 241.786 kb on + strand at 241.986 kb on + strand, within Shewana3_4356 at 241.986 kb on + strand, within Shewana3_4356 at 242.044 kb on + strand, within Shewana3_4356 at 242.107 kb on - strand, within Shewana3_4356 at 242.423 kb on - strand, within Shewana3_4357 at 242.509 kb on + strand, within Shewana3_4357 at 242.518 kb on + strand, within Shewana3_4357 at 242.617 kb on + strand, within Shewana3_4357 at 242.638 kb on - strand, within Shewana3_4357 at 242.658 kb on + strand, within Shewana3_4357
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 239,688 + Shewana3_4354 0.43 -1.7 239,701 + Shewana3_4354 0.44 -0.7 239,739 - Shewana3_4354 0.46 +0.8 239,744 + Shewana3_4354 0.46 +0.6 239,767 - Shewana3_4354 0.47 -0.1 239,767 - Shewana3_4354 0.47 +0.2 239,859 + Shewana3_4354 0.53 -0.6 239,960 + Shewana3_4354 0.59 +0.5 240,038 - Shewana3_4354 0.63 -0.1 240,082 - Shewana3_4354 0.66 +0.3 240,149 + Shewana3_4354 0.70 -0.1 240,246 + Shewana3_4354 0.75 -0.1 240,284 + Shewana3_4354 0.77 -0.5 240,284 - Shewana3_4354 0.77 +0.1 240,415 + Shewana3_4354 0.85 +0.1 240,422 - Shewana3_4354 0.85 +0.1 240,533 - +0.6 240,713 + -0.7 240,713 + -0.5 240,845 - Shewana3_4355 0.16 +0.5 240,935 - Shewana3_4355 0.25 +0.8 240,950 - Shewana3_4355 0.26 +0.8 241,161 + Shewana3_4355 0.47 -0.9 241,252 + Shewana3_4355 0.56 +0.0 241,379 - Shewana3_4355 0.68 +1.8 241,485 + Shewana3_4355 0.78 +0.6 241,493 - Shewana3_4355 0.79 -1.8 241,494 + Shewana3_4355 0.79 +1.1 241,617 - +0.4 241,621 - -0.0 241,629 - +0.1 241,643 + -1.0 241,644 + -0.2 241,652 - +0.5 241,774 + -0.6 241,774 + +0.6 241,782 - +0.4 241,786 + +0.4 241,986 + Shewana3_4356 0.22 +0.4 241,986 + Shewana3_4356 0.22 +0.3 242,044 + Shewana3_4356 0.39 +2.0 242,107 - Shewana3_4356 0.57 +0.9 242,423 - Shewana3_4357 0.20 +0.0 242,509 + Shewana3_4357 0.30 +0.1 242,518 + Shewana3_4357 0.31 +0.1 242,617 + Shewana3_4357 0.44 -0.2 242,638 - Shewana3_4357 0.46 +0.6 242,658 + Shewana3_4357 0.49 -1.8
Or see this region's nucleotide sequence