Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4321 and Shewana3_4323 are separated by 85 nucleotides Shewana3_4323 and Shewana3_4324 are separated by 590 nucleotides
Shewana3_4321: Shewana3_4321 - no description, at 210,995 to 213,400
_4321
Shewana3_4323: Shewana3_4323 - MerR family transcriptional regulator (RefSeq), at 213,486 to 213,926
_4323
Shewana3_4324: Shewana3_4324 - methionine sulfoxide reductase A (RefSeq), at 214,517 to 215,089
_4324
Position (kb) 213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 212.501 kb on - strand, within Shewana3_4321 at 212.724 kb on + strand, within Shewana3_4321 at 212.926 kb on - strand, within Shewana3_4321 at 213.090 kb on - strand, within Shewana3_4321 at 213.151 kb on + strand, within Shewana3_4321 at 213.164 kb on - strand at 213.379 kb on + strand at 213.379 kb on + strand at 213.531 kb on + strand, within Shewana3_4323 at 213.569 kb on + strand, within Shewana3_4323 at 213.706 kb on + strand, within Shewana3_4323 at 213.714 kb on - strand, within Shewana3_4323 at 213.716 kb on + strand, within Shewana3_4323 at 213.728 kb on + strand, within Shewana3_4323 at 213.736 kb on - strand, within Shewana3_4323 at 213.793 kb on - strand, within Shewana3_4323 at 213.841 kb on + strand, within Shewana3_4323 at 213.841 kb on + strand, within Shewana3_4323 at 213.849 kb on - strand, within Shewana3_4323 at 214.076 kb on - strand at 214.177 kb on + strand at 214.222 kb on + strand at 214.224 kb on + strand at 214.224 kb on + strand at 214.224 kb on + strand at 214.229 kb on + strand at 214.288 kb on - strand at 214.515 kb on + strand at 214.539 kb on - strand at 214.569 kb on - strand at 214.569 kb on - strand at 214.644 kb on + strand, within Shewana3_4324 at 214.644 kb on + strand, within Shewana3_4324 at 214.644 kb on + strand, within Shewana3_4324 at 214.652 kb on - strand, within Shewana3_4324 at 214.652 kb on - strand, within Shewana3_4324 at 214.652 kb on - strand, within Shewana3_4324 at 214.769 kb on - strand, within Shewana3_4324 at 214.787 kb on + strand, within Shewana3_4324 at 214.830 kb on - strand, within Shewana3_4324 at 214.840 kb on - strand, within Shewana3_4324 at 214.916 kb on + strand, within Shewana3_4324
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 212,501 - Shewana3_4321 0.63 +1.5 212,724 + Shewana3_4321 0.72 +0.3 212,926 - Shewana3_4321 0.80 -1.3 213,090 - Shewana3_4321 0.87 +0.5 213,151 + Shewana3_4321 0.90 +1.2 213,164 - +0.2 213,379 + -0.1 213,379 + -0.5 213,531 + Shewana3_4323 0.10 +0.2 213,569 + Shewana3_4323 0.19 -0.9 213,706 + Shewana3_4323 0.50 -0.4 213,714 - Shewana3_4323 0.52 -0.1 213,716 + Shewana3_4323 0.52 -0.3 213,728 + Shewana3_4323 0.55 -0.3 213,736 - Shewana3_4323 0.57 -3.1 213,793 - Shewana3_4323 0.70 -0.4 213,841 + Shewana3_4323 0.80 -0.9 213,841 + Shewana3_4323 0.80 -0.2 213,849 - Shewana3_4323 0.82 -1.3 214,076 - +0.2 214,177 + -1.2 214,222 + -0.8 214,224 + +1.1 214,224 + -0.6 214,224 + +0.9 214,229 + -0.4 214,288 - +1.6 214,515 + -0.5 214,539 - +3.1 214,569 - -0.3 214,569 - -0.8 214,644 + Shewana3_4324 0.22 -0.6 214,644 + Shewana3_4324 0.22 -0.4 214,644 + Shewana3_4324 0.22 -0.9 214,652 - Shewana3_4324 0.24 -1.7 214,652 - Shewana3_4324 0.24 -0.6 214,652 - Shewana3_4324 0.24 -0.7 214,769 - Shewana3_4324 0.44 -0.5 214,787 + Shewana3_4324 0.47 +0.3 214,830 - Shewana3_4324 0.55 -1.6 214,840 - Shewana3_4324 0.56 -2.1 214,916 + Shewana3_4324 0.70 -0.3
Or see this region's nucleotide sequence