Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4318 and Shewana3_4319 are separated by 2 nucleotides Shewana3_4319 and Shewana3_4320 are separated by 125 nucleotides Shewana3_4320 and Shewana3_4321 overlap by 4 nucleotides
Shewana3_4318: Shewana3_4318 - transposase Tn3 family protein (RefSeq), at 206,336 to 209,230
_4318
Shewana3_4319: Shewana3_4319 - resolvase domain-containing protein (RefSeq), at 209,233 to 209,793
_4319
Shewana3_4320: Shewana3_4320 - signal peptidase II (RefSeq), at 209,919 to 210,998
_4320
Shewana3_4321: Shewana3_4321 - no description, at 210,995 to 213,400
_4321
Position (kb) 209
210
211 Strain fitness (log2 ratio) -1
0
1
2 at 208.977 kb on + strand at 208.985 kb on - strand at 209.038 kb on + strand at 209.163 kb on + strand at 209.381 kb on + strand, within Shewana3_4319 at 209.472 kb on + strand, within Shewana3_4319 at 209.608 kb on + strand, within Shewana3_4319 at 209.723 kb on - strand, within Shewana3_4319 at 209.764 kb on - strand at 209.767 kb on + strand at 209.898 kb on + strand at 209.905 kb on + strand at 209.918 kb on - strand at 209.925 kb on - strand at 210.099 kb on + strand, within Shewana3_4320 at 210.177 kb on - strand, within Shewana3_4320 at 210.190 kb on + strand, within Shewana3_4320 at 210.325 kb on - strand, within Shewana3_4320 at 210.552 kb on + strand, within Shewana3_4320 at 210.646 kb on + strand, within Shewana3_4320 at 210.832 kb on - strand, within Shewana3_4320 at 210.965 kb on - strand at 211.018 kb on - strand at 211.091 kb on + strand at 211.156 kb on - strand at 211.172 kb on - strand at 211.227 kb on - strand at 211.283 kb on + strand, within Shewana3_4321 at 211.291 kb on - strand, within Shewana3_4321 at 211.307 kb on - strand, within Shewana3_4321 at 211.377 kb on - strand, within Shewana3_4321 at 211.390 kb on + strand, within Shewana3_4321 at 211.474 kb on + strand, within Shewana3_4321 at 211.538 kb on + strand, within Shewana3_4321 at 211.573 kb on - strand, within Shewana3_4321 at 211.738 kb on + strand, within Shewana3_4321 at 211.875 kb on + strand, within Shewana3_4321 at 211.912 kb on - strand, within Shewana3_4321 at 211.950 kb on - strand, within Shewana3_4321 at 211.954 kb on - strand, within Shewana3_4321
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 208,977 + +0.7 208,985 - +0.0 209,038 + +0.4 209,163 + -0.3 209,381 + Shewana3_4319 0.26 -0.3 209,472 + Shewana3_4319 0.43 -0.1 209,608 + Shewana3_4319 0.67 +0.2 209,723 - Shewana3_4319 0.87 +0.2 209,764 - +0.5 209,767 + -0.4 209,898 + +0.2 209,905 + +0.1 209,918 - +0.1 209,925 - -0.2 210,099 + Shewana3_4320 0.17 +0.2 210,177 - Shewana3_4320 0.24 +0.7 210,190 + Shewana3_4320 0.25 -0.7 210,325 - Shewana3_4320 0.38 -0.0 210,552 + Shewana3_4320 0.59 +0.0 210,646 + Shewana3_4320 0.67 -0.3 210,832 - Shewana3_4320 0.85 -0.3 210,965 - +0.1 211,018 - -0.1 211,091 + +0.3 211,156 - -0.4 211,172 - +0.2 211,227 - -0.3 211,283 + Shewana3_4321 0.12 +2.0 211,291 - Shewana3_4321 0.12 +0.4 211,307 - Shewana3_4321 0.13 +0.1 211,377 - Shewana3_4321 0.16 -0.1 211,390 + Shewana3_4321 0.16 -0.7 211,474 + Shewana3_4321 0.20 -0.8 211,538 + Shewana3_4321 0.23 +1.0 211,573 - Shewana3_4321 0.24 -1.1 211,738 + Shewana3_4321 0.31 -0.1 211,875 + Shewana3_4321 0.37 -0.7 211,912 - Shewana3_4321 0.38 -0.4 211,950 - Shewana3_4321 0.40 +0.2 211,954 - Shewana3_4321 0.40 -0.1
Or see this region's nucleotide sequence