Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4248 and Shewana3_4249 overlap by 4 nucleotides Shewana3_4249 and Shewana3_4250 overlap by 1 nucleotides
Shewana3_4248: Shewana3_4248 - hypothetical protein (RefSeq), at 123,084 to 124,388
_4248
Shewana3_4249: Shewana3_4249 - hypothetical protein (RefSeq), at 124,385 to 125,137
_4249
Shewana3_4250: Shewana3_4250 - KAP P-loop domain-containing protein (RefSeq), at 125,137 to 126,921
_4250
Position (kb)
124
125
126 Strain fitness (log2 ratio)
-2
-1
0
1 at 123.460 kb on + strand, within Shewana3_4248 at 123.727 kb on - strand, within Shewana3_4248 at 123.762 kb on - strand, within Shewana3_4248 at 123.856 kb on + strand, within Shewana3_4248 at 123.925 kb on + strand, within Shewana3_4248 at 123.978 kb on - strand, within Shewana3_4248 at 124.060 kb on + strand, within Shewana3_4248 at 124.235 kb on + strand, within Shewana3_4248 at 124.243 kb on - strand, within Shewana3_4248 at 124.333 kb on - strand at 124.427 kb on - strand at 124.456 kb on + strand at 124.477 kb on - strand, within Shewana3_4249 at 124.555 kb on + strand, within Shewana3_4249 at 124.563 kb on - strand, within Shewana3_4249 at 124.569 kb on + strand, within Shewana3_4249 at 124.690 kb on - strand, within Shewana3_4249 at 124.691 kb on + strand, within Shewana3_4249 at 124.846 kb on - strand, within Shewana3_4249 at 124.871 kb on + strand, within Shewana3_4249 at 124.994 kb on - strand, within Shewana3_4249 at 125.316 kb on + strand, within Shewana3_4250 at 125.375 kb on + strand, within Shewana3_4250 at 125.393 kb on + strand, within Shewana3_4250 at 126.057 kb on + strand, within Shewana3_4250 at 126.065 kb on - strand, within Shewana3_4250
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 123,460 + Shewana3_4248 0.29 -0.2 123,727 - Shewana3_4248 0.49 -0.4 123,762 - Shewana3_4248 0.52 -1.8 123,856 + Shewana3_4248 0.59 -1.0 123,925 + Shewana3_4248 0.64 -0.8 123,978 - Shewana3_4248 0.69 -0.5 124,060 + Shewana3_4248 0.75 -0.9 124,235 + Shewana3_4248 0.88 -0.5 124,243 - Shewana3_4248 0.89 +0.4 124,333 - -0.0 124,427 - +0.6 124,456 + +1.6 124,477 - Shewana3_4249 0.12 -0.8 124,555 + Shewana3_4249 0.23 +1.2 124,563 - Shewana3_4249 0.24 +0.1 124,569 + Shewana3_4249 0.24 +1.6 124,690 - Shewana3_4249 0.41 +0.0 124,691 + Shewana3_4249 0.41 +0.3 124,846 - Shewana3_4249 0.61 -0.7 124,871 + Shewana3_4249 0.65 -1.2 124,994 - Shewana3_4249 0.81 -0.0 125,316 + Shewana3_4250 0.10 -0.1 125,375 + Shewana3_4250 0.13 -0.3 125,393 + Shewana3_4250 0.14 -0.8 126,057 + Shewana3_4250 0.52 -0.1 126,065 - Shewana3_4250 0.52 -1.2
Or see this region's nucleotide sequence