Experiment: Rifampicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4221 and Shewana3_4222 are separated by 14 nucleotides Shewana3_4222 and Shewana3_4223 are separated by 259 nucleotides Shewana3_4223 and Shewana3_4224 are separated by 120 nucleotides Shewana3_4224 and Shewana3_4225 are separated by 623 nucleotides
Shewana3_4221: Shewana3_4221 - hypothetical protein (RefSeq), at 93,556 to 94,818
_4221
Shewana3_4222: Shewana3_4222 - hypothetical protein (RefSeq), at 94,833 to 95,180
_4222
Shewana3_4223: Shewana3_4223 - hypothetical protein (RefSeq), at 95,440 to 96,366
_4223
Shewana3_4224: Shewana3_4224 - hypothetical protein (RefSeq), at 96,487 to 96,696
_4224
Shewana3_4225: Shewana3_4225 - hypothetical protein (RefSeq), at 97,320 to 98,393
_4225
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.492 kb on - strand, within Shewana3_4221 at 94.492 kb on - strand, within Shewana3_4221 at 94.769 kb on - strand at 94.852 kb on - strand at 95.025 kb on - strand, within Shewana3_4222 at 95.581 kb on + strand, within Shewana3_4223 at 95.705 kb on + strand, within Shewana3_4223 at 96.864 kb on + strand at 96.864 kb on + strand at 97.205 kb on + strand at 97.205 kb on + strand at 97.213 kb on - strand at 97.252 kb on - strand at 97.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.001 mg/ml remove 94,492 - Shewana3_4221 0.74 +1.9 94,492 - Shewana3_4221 0.74 -0.1 94,769 - -2.1 94,852 - -1.2 95,025 - Shewana3_4222 0.55 -1.9 95,581 + Shewana3_4223 0.15 +1.5 95,705 + Shewana3_4223 0.29 -0.4 96,864 + -1.3 96,864 + +0.2 97,205 + +0.9 97,205 + -0.2 97,213 - +0.1 97,252 - -0.5 97,292 - -0.7
Or see this region's nucleotide sequence