Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4330

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Paraquat dichloride 0.1 mg/ml
5,701,957	+		BT4328	0.81	+0.1
5,701,958	-		BT4328	0.81	+1.4
5,701,980	-		BT4328	0.84	-1.3
5,702,090	+				+0.8
5,702,205	-		BT4329	0.18	-2.0
5,702,372	+		BT4329	0.46	+0.6
5,702,378	+		BT4329	0.47	+0.3
5,702,420	-		BT4329	0.54	-0.3
5,702,420	-		BT4329	0.54	-0.9
5,702,433	-		BT4329	0.56	-1.9
5,702,471	+		BT4329	0.63	-3.6
5,702,479	-		BT4329	0.64	-0.5
5,702,482	-		BT4329	0.64	-2.7
5,702,543	+		BT4329	0.75	+0.6
5,702,545	+		BT4329	0.75	+1.1
5,702,577	+		BT4329	0.80	-0.9
5,702,578	-		BT4329	0.81	-0.6
5,702,585	+		BT4329	0.82	+0.8
5,702,586	-		BT4329	0.82	-0.5
5,702,664	+				+1.3
5,702,664	+				-0.8
5,702,674	-				-2.2
5,702,708	+				-0.6
5,702,713	+				-1.9
5,702,714	-				+0.7
5,702,718	+				-0.9
5,702,793	+				-3.2
5,702,793	+				-0.3
5,702,825	-				-2.7
5,702,825	-				-1.9
5,702,842	+		BT4330	0.11	-0.3
5,702,842	+		BT4330	0.11	-2.2
5,703,011	+		BT4330	0.24	-2.2
5,703,241	-		BT4330	0.43	-1.9
5,703,273	-		BT4330	0.45	-5.0
5,703,350	-		BT4330	0.51	-1.9
5,703,353	-		BT4330	0.52	-2.5
5,703,434	+		BT4330	0.58	-3.8
5,703,437	-		BT4330	0.58	-2.7
5,703,466	+		BT4330	0.61	+1.7
5,703,509	-		BT4330	0.64	-0.7
5,703,585	+		BT4330	0.70	+0.7
5,703,605	+		BT4330	0.72	-2.3
5,703,606	-		BT4330	0.72	-2.7
5,703,606	-		BT4330	0.72	-1.9
5,703,606	-		BT4330	0.72	-2.3
5,703,606	-		BT4330	0.72	-2.3
5,703,639	+		BT4330	0.75	+0.7
5,703,639	+		BT4330	0.75	-1.5
5,703,639	+		BT4330	0.75	+0.7
5,703,640	-		BT4330	0.75	+0.7
5,703,640	-		BT4330	0.75	-2.9
5,703,640	-		BT4330	0.75	+0.3
5,703,642	-		BT4330	0.75	-2.8
5,703,642	-		BT4330	0.75	-4.7
5,703,642	-		BT4330	0.75	-2.9
5,703,643	+		BT4330	0.75	-3.6
5,703,643	+		BT4330	0.75	-3.2
5,703,644	-		BT4330	0.75	-2.5
5,703,671	+		BT4330	0.77	-1.3
5,703,705	-		BT4330	0.80	-1.7
5,703,705	-		BT4330	0.80	-0.3
5,703,746	-		BT4330	0.83	-2.5
5,703,769	-		BT4330	0.85	-2.8
5,703,876	-				-1.9
5,703,930	+				-3.0
5,703,931	-				-2.5
5,703,949	+				-2.0
5,703,996	+				-2.3
5,703,996	+				-1.5
5,704,044	+				-3.5
5,704,055	+				-2.6
5,704,090	+				-1.7
5,704,090	+				+0.4
5,704,117	+				-3.6
5,704,119	+				+0.2
5,704,172	+				+2.4
5,704,211	-				-0.7
5,704,330	+				+0.9
5,704,331	-				+0.9
5,704,331	-				-1.3
5,704,332	+				+0.9
5,704,332	+				-1.2
5,704,333	-				-0.6
5,704,333	-				-0.4
5,704,333	-				-0.9
5,704,336	-				-2.7
5,704,336	-				-1.0
5,704,340	+				-1.2
5,704,340	+				-1.6
5,704,341	-				+0.7
5,704,341	-				-0.8
5,704,344	+				+0.6
5,704,344	+				+0.4
5,704,344	+				+0.1
5,704,344	+				-2.8
5,704,349	+				-1.7
5,704,349	+				-2.5
5,704,366	-				-2.6
5,704,385	+				+0.9
5,704,387	+				-0.3
5,704,387	+				+0.1
5,704,387	+				-1.5
5,704,433	+				-2.6
5,704,433	+				+0.4
5,704,433	+				-3.0
5,704,433	+				+1.4
5,704,433	+				+0.7
5,704,434	-				-2.8
5,704,434	-				-1.9
5,704,434	-				+0.2
5,704,434	-				+0.8
5,704,434	-				+0.2
5,704,434	-				-2.5
5,704,450	+				-0.9
5,704,450	+				-3.5
5,704,604	-		BT4331	0.23	-1.7
5,704,644	+		BT4331	0.26	-3.4
5,704,669	-		BT4331	0.28	-1.3
5,704,727	+		BT4331	0.33	+1.7
5,704,728	-		BT4331	0.33	-1.2
5,704,778	+		BT4331	0.38	+0.5
5,704,802	-		BT4331	0.40	+0.7
5,704,806	+				+0.7
5,704,806	+		BT4331	0.40	-0.5
5,704,806	+		BT4331	0.40	-2.7
5,704,807	-		BT4331	0.40	-0.9
5,704,807	-		BT4331	0.40	-2.3
5,704,807	-		BT4331	0.40	-2.7
5,704,807	-		BT4331	0.40	+0.7
5,704,827	+		BT4331	0.42	-1.9
5,704,828	-		BT4331	0.42	-1.4
5,704,837	+		BT4331	0.43	-2.8
5,704,837	+		BT4331	0.43	-2.4
5,704,838	-		BT4331	0.43	-3.1
5,704,863	+		BT4331	0.45	-3.0
5,704,864	-		BT4331	0.45	+1.6
5,704,934	+		BT4331	0.51	+1.4
5,704,935	-		BT4331	0.51	-2.6