Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3100

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Paraquat dichloride 0.1 mg/ml
3,939,825	-		BT3099	0.61	-1.7
3,939,854	-		BT3099	0.66	-1.1
3,939,881	-		BT3099	0.71	+1.1
3,939,890	+		BT3099	0.73	-1.0
3,939,894	+		BT3099	0.73	-1.0
3,939,894	+		BT3099	0.73	-1.4
3,939,895	-		BT3099	0.74	-2.7
3,939,895	-		BT3099	0.74	-2.4
3,939,895	-		BT3099	0.74	-1.9
3,939,900	+		BT3099	0.74	-1.6
3,939,913	+		BT3099	0.77	+1.3
3,940,028	-				+0.3
3,940,050	+				+0.8
3,940,051	-				+0.8
3,940,058	+				+0.8
3,940,058	+				+0.2
3,940,058	+				-1.9
3,940,076	+				-0.3
3,940,076	+				-0.7
3,940,076	+				-0.9
3,940,076	+				+0.1
3,940,077	-				-0.2
3,940,108	+				-1.1
3,940,119	+				-2.0
3,940,120	-				-0.8
3,940,129	+				+0.9
3,940,130	-				+0.8
3,940,130	-				-1.8
3,940,135	+				-0.1
3,940,135	+				-0.2
3,940,135	+				-1.5
3,940,136	-				-2.0
3,940,148	-				-0.2
3,940,148	-				+1.4
3,940,148	-				-2.1
3,940,150	+				-1.5
3,940,151	-				+0.7
3,940,151	-				-1.1
3,940,155	+				+0.0
3,940,155	+				-1.9
3,940,155	+				-1.0
3,940,156	-				-3.4
3,940,157	+				-1.9
3,940,159	+				-1.6
3,940,173	+				-2.1
3,940,173	+				-3.0
3,940,175	+				-0.9
3,940,175	+				+0.2
3,940,241	+				-1.5
3,940,241	+				-1.2
3,940,242	-				+0.4
3,940,288	+				-0.7
3,940,293	-				-0.7
3,940,313	+				+1.4
3,940,319	+				-2.6
3,940,331	+				-0.2
3,940,354	-				+0.1
3,940,357	+				-0.9
3,940,358	-				+0.9
3,940,384	-				-0.1
3,940,389	-				+0.4
3,940,389	-				+0.8
3,940,436	+				+0.9
3,940,463	+				-0.0
3,940,463	+				-2.0
3,940,464	-				-1.4
3,940,464	-				-1.2
3,940,492	+				-0.4
3,940,554	-				+1.4
3,940,618	-				-0.7
3,940,661	+				+2.4
3,940,680	+				-2.3
3,940,681	-				+1.1
3,940,724	+				-1.1
3,940,725	-				+0.6
3,940,727	+				+1.0
3,940,728	-				+0.2
3,940,728	-				+0.5
3,940,739	-				-0.1
3,940,776	+				+1.4
3,940,828	+				-1.4
3,940,829	-				+2.0
3,940,829	-				-1.2
3,940,834	-				-2.3
3,940,861	+				-2.8
3,940,897	+				-2.0
3,940,898	-				+1.0
3,940,929	+		BT3100	0.12	+0.4
3,940,931	+		BT3100	0.12	-2.7
3,940,955	+		BT3100	0.15	+1.6
3,940,956	-		BT3100	0.15	-1.3
3,941,006	-		BT3100	0.21	+0.7
3,941,006	-		BT3100	0.21	+0.4
3,941,060	-		BT3100	0.27	-1.1
3,941,060	-		BT3100	0.27	-1.5
3,941,063	+		BT3100	0.27	-2.9
3,941,064	-		BT3100	0.28	-1.2
3,941,085	+		BT3100	0.30	+1.4
3,941,109	+		BT3100	0.33	-1.0
3,941,130	-		BT3100	0.35	-0.6
3,941,176	+		BT3100	0.40	-0.9
3,941,177	-		BT3100	0.40	+0.4
3,941,197	+		BT3100	0.43	-1.9
3,941,282	+		BT3100	0.52	-0.4
3,941,283	-		BT3100	0.53	+1.0
3,941,283	-		BT3100	0.53	+1.5
3,941,283	-		BT3100	0.53	+0.4
3,941,314	+		BT3100	0.56	+1.4
3,941,353	+		BT3100	0.61	-0.3
3,941,353	+		BT3100	0.61	+0.7
3,941,353	+		BT3100	0.61	-0.9
3,941,354	-		BT3100	0.61	-1.3
3,941,354	-		BT3100	0.61	-1.0
3,941,388	-		BT3100	0.64	-3.6
3,941,403	+		BT3100	0.66	-1.2
3,941,403	+		BT3100	0.66	+0.3
3,941,404	-		BT3100	0.66	+2.1
3,941,407	+		BT3100	0.67	-1.4
3,941,520	+		BT3100	0.80	-0.4
3,941,533	+		BT3100	0.81	+0.4
3,941,534	-		BT3100	0.81	-1.7
3,941,551	+		BT3100	0.83	-1.0
3,941,552	-		BT3100	0.83	-2.8
3,941,566	+		BT3100	0.85	-0.8
3,941,588	-		BT3100	0.87	-3.1
3,941,588	-		BT3100	0.87	-0.7
3,941,608	+		BT3100	0.90	-2.3
3,941,615	+				+1.8
3,941,618	+				+0.0
3,941,619	-				-0.6
3,941,635	+				-0.1
3,941,636	-				+1.4
3,941,642	+				-1.7
3,941,654	+				-1.6
3,941,659	+				-2.2
3,941,682	-				-2.3
3,941,705	-				-0.9
3,941,737	+				+0.1
3,941,737	+				-0.7
3,941,737	+				-0.6
3,941,738	-				-1.3
3,941,738	-				-0.6
3,941,765	+				-1.9
3,941,770	+				+1.3
3,941,770	+				-1.4
3,941,771	-				-0.9
3,941,771	-				-0.6
3,941,844	+				-1.6
3,941,848	+				-0.7
3,941,848	+				-1.2
3,941,870	-				+0.4
3,941,895	+				+0.5
3,941,895	+				+0.8
3,941,896	-				+0.9
3,941,959	+				-0.9
3,941,979	+				+0.0
3,941,982	+				+0.1
3,941,983	-				-2.1
3,941,985	+				+0.4
3,941,993	+				-2.7
3,942,001	-				-0.9
3,942,040	+		BT3101	0.12	-1.6
3,942,047	+		BT3101	0.13	-1.3
3,942,048	-		BT3101	0.13	-2.3
3,942,132	+		BT3101	0.19	-1.7
3,942,145	-		BT3101	0.20	-0.9
3,942,181	-		BT3101	0.22	-3.4
3,942,193	-		BT3101	0.23	+0.8
3,942,194	+		BT3101	0.23	-1.8
3,942,194	+		BT3101	0.23	-0.2
3,942,194	+		BT3101	0.23	+0.7
3,942,195	-		BT3101	0.23	+1.4
3,942,213	-		BT3101	0.25	+0.6
3,942,262	-		BT3101	0.28	-0.8
3,942,288	+		BT3101	0.30	+1.6
3,942,338	-		BT3101	0.34	-0.7
3,942,364	+		BT3101	0.36	-1.0
3,942,364	+		BT3101	0.36	-0.2
3,942,364	+		BT3101	0.36	+1.9
3,942,365	-		BT3101	0.36	-1.8
3,942,385	+		BT3101	0.37	+0.2
3,942,385	+		BT3101	0.37	-0.9
3,942,386	-		BT3101	0.37	+1.9
3,942,386	-		BT3101	0.37	+1.4
3,942,386	-		BT3101	0.37	+0.5
3,942,401	-		BT3101	0.38	+0.4
3,942,403	+		BT3101	0.39	+1.0
3,942,434	-		BT3101	0.41	-1.2
3,942,466	+		BT3101	0.43	-1.4
3,942,466	+		BT3101	0.43	+1.4
3,942,466	+		BT3101	0.43	-1.6
3,942,479	+		BT3101	0.44	-1.4
3,942,529	+		BT3101	0.48	-0.6
3,942,530	-		BT3101	0.48	-1.4
3,942,570	+		BT3101	0.51	-2.0
3,942,577	+		BT3101	0.51	-0.2
3,942,578	-		BT3101	0.51	+1.0
3,942,624	+		BT3101	0.55	-1.5
3,942,625	-		BT3101	0.55	+1.7
3,942,625	-		BT3101	0.55	-0.8
3,942,655	+		BT3101	0.57	-1.8
3,942,656	-		BT3101	0.57	-1.8
3,942,656	-		BT3101	0.57	-0.2
3,942,656	-		BT3101	0.57	-1.9
3,942,659	+		BT3101	0.57	-0.5
3,942,659	+		BT3101	0.57	+0.3
3,942,659	+		BT3101	0.57	+0.9
3,942,660	-		BT3101	0.57	+1.4
3,942,660	-		BT3101	0.57	-0.9
3,942,660	-		BT3101	0.57	+0.1